Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_029073.1 Length=141298 Score E Sequences producing significant alignments: (Bits) Value seq477 313 2e-80 >seq477 Length=240241 Score = 313 bits (346), Expect = 2e-80 Identities = 521/741 (70%), Gaps = 20/741 (3%) Strand=Plus/Minus Query 48700 CCTTTTAATACTTGAATAGCCTCTTTGACTTCATTTGCATTTCCCACTTCATATCCTAAT 48759 ||||||||| ||| | | | || | || |||| | ||||| || | | || ||||||| Sbjct 226218 CCTTTTAATGTTTGCAAAACTTCATAGATTTCAATGGCATTACCAATTGCACGTCCTAAT 226159 Query 48760 GGCTGATTCATATCTGTAATGACTGC---AATTGTTTTTCGATTCAGATTTTTTCCAATA 48816 || || ||||| || || |||| |||| | || ||| | || |||| | Sbjct 226158 GGTTGTGACATATTAGTGATCTCTGCTGCAATTTTCTT---ATTAAATTTAATTCCTAAT 226102 Query 48817 TCAACCATTTCTTGTGCTAATGCTTTAGAGTCTTCTAA---TGTTTTCATAAATGCTCCA 48873 |||||||| ||| |||||| ||| | | ||||| | |||||||||||| |||||| Sbjct 226101 TCAACCATAATTTGAGCTAAT--TTTCGTG-CTTCTGAAATTGTTTTCATAAAAGCTCCA 226045 Query 48874 TTTCCTGTTTTAACATCTAATACAATTGCATCTGCTCCCATTGCGAtttttttACTCATA 48933 |||| ||||||||||| ||||| |||| ||| |||| |||||||||| |||| Sbjct 226044 CTTCCGCACTTAACATCTAAGACAATGCCATCACTTCCTGTTGCAATTTTTTTACACATA 225985 Query 48934 ATGCTACTAGCAATTAATGGAATTGAATTAACTGTTCCAGTAACATCGCGTAATGCATAT 48993 || || |||| |||||| | |||| ||||||| | ||||||| |||||| ||||| Sbjct 225984 ATACTTGCCGCAACTAATGGCAAAGAATCAACTGTTGCTGTAACATTGCGTAAAGCATAA 225925 Query 48994 AATTTTTTGTCGGCAGGCACTAAAATTCCACTTTGTCCAACTAATGCGAT---TTTATGT 49050 | ||| || || || || || | | | | |||| | |||| ||| ||| | | Sbjct 225924 ATTTTCTTATCAGCTGGAACAATATTAGTAGATTGTGACA-TAATT-GATAAATTTGTTT 225867 Query 49051 GTATTAACTTGATTAATAAATTGTTCTCTTGTTAATTCTACGTTAAAGCCTTGTATAGAT 49110 | ||||| |||| ||||| | | ||| || |||| ||| ||||| Sbjct 225866 G-ATTAATAATTTTAACAAATTCAGAAAAAGAAATTTCAACTCTAAAACCTGGTATACTC 225808 Query 49111 TCTAATTTGTCAATTGTTCCTCCTGTGTGCCCTAAACCTCTACCTGACATTTTAGCAACA 49170 |||||||| |||||||| || || || || || ||||| | ||| |||||||| ||||| Sbjct 225807 TCTAATTTATCAATTGTCCCACCAGTTTGTCCCAAACCACGACCAGACATTTTGGCAACT 225748 Query 49171 GGAATACCCAAAGAAGCAACCAATGGAGCAACGATTAAACTAATTTTATCGCCGACTCCA 49230 | ||| |||| |||||| ||||| ||| |||||||||| ||||||||| || ||| Sbjct 225747 TTCAAACCAAAAGCAGCAACTAATGGTGCATAAATTAAACTAACTTTATCGCCAACCCCA 225688 Query 49231 CCTGTGGAATGTTTATCTACTTTTACACCTTCGATTTTTGATAGGTCAATTGTTTCACCA 49290 || | ||||||||||| || || | ||| ||| |||||| ||| ||||||| Sbjct 225687 CCAGAAGAATGTTTATCAACCTTAAACCCTGAAATTGATGATAGATCATAAATTTCACCC 225628 Query 49291 GAATTAATCATGGCATTAGTTAAGGCAGAGATTTCTTCTTTAGACATGCCATTGAAA-TA 49349 ||||||||||| || | ||||| || ||||| ||||||| | |||||| || Sbjct 225627 GAATTAATCATCGCTTCTGTTAAAAATGAAATTTCAGAAATAGACAT-CGTTTGAAAATA 225569 Query 49350 AATTGCCATTAACATAGAAGCCATTTGATAATCAGGAATGTCGCCGTTCGTGTAACCGCG 49409 ||||| |||||| | || | |||||||||||| ||||| || |||| ||||| Sbjct 225568 AATTGTCATTAAAAAAGCTGACATTTGATAATCGGGAATTAATCCTGTCGTATAACCTTC 225509 Query 49410 GATGATAAAATCAATTTCTTC 49430 || ||||||| ||||||||| Sbjct 225508 GACAATAAAATTAATTTCTTC 225488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452012067483600