Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_029119.1 Length=127726 Score E Sequences producing significant alignments: (Bits) Value seq477 172 4e-38 >seq477 Length=240241 Score = 172 bits (190), Expect = 4e-38 Identities = 314/449 (70%), Gaps = 22/449 (5%) Strand=Plus/Minus Query 125924 TTATACCGCAATAGGTGCTTTAAT--AGCAGGGTGTGATTCATAATTTATCAATTCTAA- 125980 ||| || |||| | | ||||||| | ||| || | ||||||||| |||| ||| Sbjct 224138 TTAGACAGCAACAACTCCTTTAATTAATGAGGCTGGG--TCATAATTT-TCAAGGGTAAT 224082 Query 125981 ATCTTCATAATTAATATCAAAAATTGATTTATCTGT---ATTAATTTTTAATTGAGGTGG 126037 ||| |||||| || |||||| | || ||| ||| ||| | |||||| || ||| Sbjct 224081 ATCCTCATAAACAAAATCAAATAAAGAATTAATTGTTGGATTTAATTTTAA---AGTTGG 224025 Query 126038 TAGATAAC----TATCTCTTGATAATTGTGTATGTA-TTGCATCCATATGATTGGAATAA 126092 || | | | | ||||| ||| ||| || | ||| | | ||| || |||| Sbjct 224024 TAATTTGCGTGGTGT-TCTTGTTAACTGTTCATTAACTTGTGTAAA-ATGGTTTTTATAA 223967 Query 126093 ATATGTGCATCTCCAAATGTATGAATGAATTCACCCACCTCAAGTCCACATTCTTTTGCA 126152 ||||| |||||| ||||| | || || ||||| || || | ||| | ||| ||| Sbjct 223966 ATATGGCAATCTCCTAATGTGTAAACAAAATCACCAACTTCTAATCCTGAAACTTGCGCA 223907 Query 126153 ACAAGATGTGTCAGTAAAGCATAACTTGCAATATTGAAAGGAACACCTAAAAATATATCA 126212 | | ||| || | || | ||||||||||||||| ||||||||||||||||| | |||| Sbjct 223906 ATTAAATGAGTTAACAACGAATAACTTGCAATATTAAAAGGAACACCTAAAAAAACATCA 223847 Query 126213 GCACTTCTTTGATATAATTGACAATTTAATTTACCCTCTTGT---ACGTAAAATTGAAAC 126269 ||||| | |||||| ||||||||| |||||||| |||| | || |||||||| | Sbjct 223846 GCACTACGTTGATACAATTGACAACTTAATTTATTATCTTTTGAAACATAAAATTGCATT 223787 Query 126270 ATTGTGTGGCAAGGTGGTAATGCCATTGAATCGATTTCAGTAGGATTCCATGCTGAAACA 126329 | || || || || || || |||||| || ||||||| |||||||| || |||| Sbjct 223786 AAAGTATGACATGGCGGCAACGCCATTTTTTCAATTTCAGCTGGATTCCAAGCACTAACA 223727 Query 126330 ATGTGACGTCGAGAGTTTGGATTGGTTTT 126358 || || || || || | |||||| ||||| Sbjct 223726 ATATGGCGACGTGAATATGGATTAGTTTT 223698 Score = 123 bits (136), Expect = 2e-23 Identities = 122/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 126654 TATTGAATGTTTGTATCTCCTTTAATAAACCATAATAATTCAGTTGCTACTAATTTAAAA 126713 |||| ||| || ||||| |||||||| || |||||||||||| | ||| |||||||| Sbjct 223480 TATTTAATATTAGTATCACCTTTAATGAATCATAATAATTCATAAACAACTGATTTAAAA 223421 Query 126714 GAAACCTTTTTGGTTGTAAGTAAAGGAAACCCTTTGGTTAAATCGAAACGCAATTGATGC 126773 || |||||| ||||| | ||| ||||| |||| ||||| ||||||| ||||| Sbjct 223420 TGAATCTTTTTCGTTGTTAATAACGGAAAACCTTCTTGTAAATTAAAACGCATTTGATAA 223361 Query 126774 CCAAATTTGGAAATTGTCCCGGTATGTGTGCGATCATC 126811 ||||| | |||||||| || |||| ||| |||||||| Sbjct 223360 CCAAAATAAGAAATTGTACCAGTATTTGTTCGATCATC 223323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408586473395765