Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq565 114 9e-21 seq161 114 9e-21 seq451 109 4e-19 seq383 95.1 9e-15 >seq565 Length=193464 Score = 114 bits (126), Expect = 9e-21 Identities = 168/236 (71%), Gaps = 10/236 (4%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 ||||||||||| || || ||||| | ||||| ||| ||| || | || || ||| Sbjct 159590 AAAATGCAAATCTTCGTAAAAACATTAACTGGCAAAACTATCACTTTGGAAGTTGAA--- 159534 Query 27847 ACCGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGA 27901 ||| | | ||| |||| || ||| || || ||||| |||||| |||| Sbjct 159533 -CCGTC-AGATACTATCGAAAATGTTAAAGCCAAGATTCAAGACAAGGAAGGTATTCCTC 159476 Query 27902 TGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCG 27961 || |||||||| || ||||||||||| || ||| |||| |||| ||||| |||||||| Sbjct 159475 CAGACCAGCAACGTTTGATTTTTGCCGGCAAGCAACTGGAAGACGGACGCACCTTGTCCG 159416 Query 27962 ATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||| || || || || ||| || ||||||||||| | ||| |||| || ||| Sbjct 159415 ATTATAATATTCAGAAGGAGTCAACCTTGCATTTGGTCCTACGTCTGCGCGGTGGC 159360 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| |||||| | ||||| ||| || || | || || ||| | Sbjct 150862 ATGCAAATATTTGTTAAAACTTTGACTGGAAAAACCATCACTTTGGAAGTAGAATCGTCG 150803 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 || | | || || ||| |||||| ||||| |||||| |||| || || Sbjct 150802 GATACTATCGAAAACGTTAAAGCAAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCAA 150743 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 || || || || ||||| |||||||| ||||| |||| |||| ||||| ||||||||| Sbjct 150742 CAGCGTTTGATCTTTGCTGGAAAACAGTTGGAAGACGGCCGCACGTTGTCTGATTACAAC 150683 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || ||||| ||| ||||||||||| |||||| | || || || Sbjct 150682 ATACAGAAAGAATCCACATTGCATTTGGTATTGCGTCTCCGCGGTGG 150636 Score = 107 bits (118), Expect = 1e-18 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || ||||| | ||||| ||| || || | || ||||| || Sbjct 159131 ATGCAAATTTTCGTCAAAACATTGACTGGTAAAACCATCACTTTAGAAGTCGAGCCTTCC 159072 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| ||||| ||||| || || ||||| | || || | Sbjct 159071 GATACCATTGAGAAT--GTCAAGGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATC 159014 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| || || ||||| || ||||||||||| |||| ||||| |||||||||||||| Sbjct 159013 AACAACGTTTGATCTTTGCTGGCAAACAATTGGAAGACGGACGCACCTTGTCCGATTACA 158954 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 | || || || ||| || |||||||||||| | ||| |||| || ||| Sbjct 158953 ATATTCAGAAGGAGTCAACCTTGCATTTGGTTCTACGTCTGCGCGGTGGC 158904 Score = 104 bits (114), Expect = 2e-17 Identities = 157/220 (71%), Gaps = 10/220 (5%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||| |||||| | ||||| ||| || || | || || ||| || Sbjct 150635 AATGCAAATATTTGTTAAAACTTTGACTGGAAAAACCATCACTTTGGAAGTAGAAC-CAT 150577 Query 27849 CGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903 || ||| || |||| || ||| |||||| ||||| |||||| |||| Sbjct 150576 CG--GAT--ACTATCGAAAACGTTAAAGCAAAAATCCAAGACAAGGAAGGTATTCCTCCA 150521 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || || || || |||||||| || || ||||| ||||| || | |||| ||||| ||| Sbjct 150520 GACCAACAGCGTTTAATTTTCGCTGGCAAACAGTTGGAAGATGGCCGCACATTGTCTGAT 150461 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGC 28003 |||||||| ||||| || ||| |||||||| || |||| Sbjct 150460 TACAACATACAAAAGGAATCCACATTGCATTTAGTATTGC 150421 Score = 98.7 bits (108), Expect = 7e-16 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || || ||||| || || ||||| || ||||||||||| |||| ||||| |||||||||| Sbjct 159245 GATCAACAACGTTTGATCTTTGCTGGCAAACAATTGGAAGACGGACGCACCTTGTCCGAT 159186 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||| || || || ||| || ||||||||||| | ||| |||| || ||| Sbjct 159185 TACAATATTCAGAAGGAGTCAACCTTGCATTTGGTCCTACGTCTGCGCGGTGGC 159132 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || || ||||| || || ||||| || ||||||||||| |||| ||||| || || ||| Sbjct 156591 GATCAACAACGTTTGATCTTTGCTGGCAAACAATTGGAAGACGGACGCACTTTATCTGAT 156532 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| || || || ||| || ||||||||||| | |||||||| || || Sbjct 156531 TACAATATTCAGAAGGAGTCGACATTGCATTTGGTCCTACGTTTGCGCGGTGG 156479 Score = 86.0 bits (94), Expect = 4e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 27865 GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTT 27924 || ||| |||||| ||||| |||||| |||| || || || || |||||||| Sbjct 145917 GTTAAAGCAAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCAACAGCGTTTAATTTTC 145858 Query 27925 GCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGC 27984 || || ||||||||||| || | |||| ||||| ||||||||||| ||||| || Sbjct 145857 GCTGGCAAACAATTGGAAGATGGCCGCACATTGTCTGATTACAACATACAAAAGGAATCT 145798 Query 27985 ACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||| | || ||||| ||||| | || || || Sbjct 145797 ACTCTTCACTTGGTACTGCGTCTCCGCGGAGG 145766 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/234 (68%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 27786 TAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAG 27845 ||||||||| || || ||||| || | ||||| ||| ||| || | || || || Sbjct 151094 TAAAATGCAGATCTTCGTGAAGACATTGACTGGAAAAACTATCACCTTGGAGGTTGAGCC 151035 Query 27846 CACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903 |||| | || | ||| || ||| ||||| || ||||| ||||| || Sbjct 151034 ATCCGATACTATTGAGAAT--GTTAAAACTAAAATTCAAGATAAAGAGGGTGTCCCACCA 150977 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || || ||||| || || ||||| || ||||| ||||| | | |||| | || || Sbjct 150976 GATCAACAACGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCTCTGAC 150917 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||| || ||||| || | ||||||||||| ||||||||||| ||| Sbjct 150916 TACAACATTCAGAAAGAATCGACACTCCATTTGGTTTTACGTTTGCGTGGTGGC 150863 >seq161 Length=579164 Score = 114 bits (126), Expect = 9e-21 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 27781 AATAGTAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTC 27840 |||| ||||||||||||||||| |||||||||||||| ||| |||||| | || || Sbjct 362459 AATATAAAAATGCAAATTTTTGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTT 362400 Query 27841 GAAAGCACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCG 27900 || ||||| | | || ||||| ||||| || |||||||| |||| Sbjct 362399 GAGCCTTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCT 362340 Query 27901 ATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCC 27960 || || ||||| || ||||| || || ||||||||||| || | || | || || Sbjct 362339 CCAGATCAACAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGGCGGACTTTATCG 362280 Query 27961 GATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| ||||| ||||| ||| || ||||| ||||| | ||| | ||||| || Sbjct 362279 GATTATAACATACAAAAGGAGTCGACCTTGCACTTGGTACTCCGTCTCCGTGGTGG 362224 >seq451 Length=246926 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| |||||||| ||||| || || || || || || |||| |||||| | Sbjct 37998 AATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCC 37939 Query 27847 ACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | ||| | | || || ||| || || |||||||| || |||| || Sbjct 37938 TCGGACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGAC 37879 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||||| || ||||| || ||||| |||||||| || | |||| ||||||||||| Sbjct 37878 CAGCAACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGTCGCACATTGTCCGATTAT 37819 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || |||||||| ||| || ||| | || ||||||||||| || || Sbjct 37818 AATATTCAAAAAGAATCCACATTACATCTTGTGTTGCGTTTGCGAGGTGG 37769 >seq383 Length=330124 Score = 95.1 bits (104), Expect = 9e-15 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 || || ||||| | ||| || ||||| || ||||||||||| ||||| |||||||| Sbjct 43589 GATAAGGAAGGAATCCCGCCAGATCAGCAGCGTTTAATTTTTGCTGGAAAGCAATTGGAG 43648 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | || | | || ||||| ||||| || |||||| ||||||||||| || || Sbjct 43649 GATGGCCGTACTCTTTCGGATTATAACATACAGAAAGAGTCAACTTTGCATTTAGTCCTG 43708 Query 28003 CGTTTGCGTGGCGGC 28017 ||||||||||| ||| Sbjct 43709 CGTTTGCGTGGGGGC 43723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355852012710165