Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq565 141 2e-28 seq383 132 1e-25 seq161 122 2e-22 >seq565 Length=193464 Score = 141 bits (156), Expect = 2e-28 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 ||||| || ||||| ||||| ||||| | | || | |||||||||| ||| ||||| Sbjct 150438 GTGGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCATCTTCCAACTGTTTGCCA 150497 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 ||||| || | || |||||||| ||||||| ||||||||||| ||||| ||| ||| Sbjct 150498 GCGAAAATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGATTTTTGCTTTA 150557 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 ||||||||||| || || || ||| || || | |||||| || ||||| || | ||| Sbjct 150558 ACGTTTTCGATAGTATCCGATGGTTCTACTTCCAAAGTGATGGTTTTTCCAGTCAAAGTT 150617 Query 211098 TTTACAAACACCTGCATT 211115 || ||||| | |||||| Sbjct 150618 TTAACAAATATTTGCATT 150635 Score = 134 bits (148), Expect = 3e-26 Identities = 164/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || || | |||||| | || | || ||||| || || || |||||||| | | ||| Sbjct 159367 CGCAGACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTATAATCGGACAAGGTG 159426 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||| |||||||| |||||||| || || || | ||||| ||||| ||||||| ||| Sbjct 159427 CGTCCGTCTTCCAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCT 159486 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 |||||||| || ||||| ||| || |||||||| || || || |||||| || | | Sbjct 159487 TCCTTGTCTTGAATCTTGGCTTTAACATTTTCGATAGTATCTGACGGTTCAACTTCCAAA 159546 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || || || || | || ||||| || | |||||||| Sbjct 159547 GTGATAGTTTTGCCAGTTAATGTTTTTACGAAGATTTGCATTTT 159590 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 ||||| ||||| || ||||| ||||| | | || | || ||||||| ||| || || Sbjct 150666 GTGGATTCTTTCTGTATGTTGTAATCAGACAACGTGCGGCCGTCTTCCAACTGTTTTCCA 150725 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || ||||| | || |||||||| ||||||| ||||||||||| ||||| ||| ||| Sbjct 150726 GCAAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGATTTTTGCTTTA 150785 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 ||||||||||| || || || ||| || || | |||||| || ||||| || | ||| Sbjct 150786 ACGTTTTCGATAGTATCCGACGATTCTACTTCCAAAGTGATGGTTTTTCCAGTCAAAGTT 150845 Query 211098 TTTACAAACACCTGCAT 211114 || ||||| | ||||| Sbjct 150846 TTAACAAATATTTGCAT 150862 Score = 118 bits (130), Expect = 2e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||||||||| || || ||||| ||||| ||||| | | || | |||||| Sbjct 145781 AGTACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCATCT 145840 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| || ||||| ||||| || | || |||||||| ||||||| ||||||||||| Sbjct 145841 TCCAATTGTTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCT 145900 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGA 211057 ||||| ||| ||| ||||||||||| || || || Sbjct 145901 TGGATTTTTGCTTTAACGTTTTCGATAGTATCCGA 145935 >seq383 Length=330124 Score = 132 bits (146), Expect = 1e-25 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || | || || || || || |||||||| ||||| || | | ||| Sbjct 43944 CGAAGACGTAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGACAAGGTG 43885 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||||||||||||||| || || || || | ||| ||||| || ||||||| ||| Sbjct 43884 CGGCCATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGGAATGCCT 43825 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || ||||| || || ||| ||| ||||| || || || || ||| ||| || || | | Sbjct 43824 TCTTTGTCTTGAATTTTTGCTTTAACGTTCTCAATAGTATCCGAGGGTTCTACTTCTAAA 43765 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || || | ||| |||||||| | |||||| Sbjct 43764 GTGATGGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCAT 43724 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | || | ||| |||||||| || ||||||||||||| ||| || | ||||| Sbjct 43707 AGGACTAAATGCAAAGTTGACTCTTTCTGTATGTTATAATCCGAAAGAGTACGGCCATCC 43648 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||| || || || || | || || || || || || | ||||||||| || Sbjct 43647 TCCAATTGCTTTCCAGCAAAAATTAAACGCTGCTGATCTGGCGGGATTCCTTCCTTATCT 43588 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || || ||| || || || || |||||||| |||||||| | |||||| || Sbjct 43587 TGAATTTTAGCTTTAACATTCTCAATAGTGTCAGACGGCTCAACCTCTAAAGTGATAGTT 43528 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || | ||||| || || | ||||||||| Sbjct 43527 TTGCCAGTCAATGTCTTCACGAAGATCTGCATTTT 43493 >seq161 Length=579164 Score = 122 bits (134), Expect = 2e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || ||||| ||||| ||||||||||||| | |||| |||||||||| || || || Sbjct 362254 GTCGACTCCTTTTGTATGTTATAATCCGATAAAGTCCGCCCATCTTCCAATTGTTTACCA 362313 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 ||||| || | |||||||| || ||||||| ||||| || ||||| || || || Sbjct 362314 GCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTG 362373 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || ||||| || ||||| || ||||| || | ||| || || || || || ||||| Sbjct 362374 ACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTT 362433 Query 211098 TTTACAAACACCTGCATTTT 211117 || ||||| | |||||||| Sbjct 362434 TTAACAAAAATTTGCATTTT 362453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159116430334175