Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq565 95.1 1e-14 seq383 89.7 4e-13 >seq565 Length=193464 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || |||||||| | ||| ||||| ||||| || ||||| | | || || || Sbjct 150648 CGCAATACCAAATGCAATGTGGATTCTTTCTGTATGTTGTAATCAGACAACGTGCGGCCG 150707 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || | |||||| || ||||| || | |||||| ||||| | || | | || ||| Sbjct 150708 TCTTCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTG 150767 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 || |||||| || || | ||| | | ||||| ||| || || |||| ||||| Sbjct 150768 TCTTGGATTTT-TGCTTTAACGTTTTCGATAGTATCCGACGATTCTACTTCCAAAGTGAT 150826 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||||| |||| ||||||||||| |||||||| Sbjct 150827 GGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 150862 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG-CAAGTGTTCGTTC 39128 |||| |||||||| | || ||| || || ||||||||||||| |||| || ||| | Sbjct 159373 CGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTATAATCGGACAAG-GTGCGTCC 159431 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || || || ||||| ||||| || | ||| |||||||| | || | | || || Sbjct 159432 GTCTTCCAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCTTCCTT 159491 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 ||| || || ||| | | | | ||||| || || || |||| ||||| Sbjct 159492 GTCTTGAATCTTGGCTTTAACATTTTCGATAGTATCTGACGGTTCAACTTCCAAAGTGAT 159551 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 | |||| || || | ||||| || ||||||||||| ||| Sbjct 159552 AGTTTTGCCAGTTAATGTTTTTACGAAGATTTGCATTTTT 159591 >seq383 Length=330124 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC-GG 39115 |||||| | | |||||||||||||| ||||| || ||||| |||||||| || | Sbjct 43951 GCCTCCGCGAAGACGTAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGA 43892 Query 39116 CAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGG 39175 |||| || || | || || ||||| || || ||||| || | ||||| || || | | Sbjct 43891 CAAG-GTGCGGCCATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAG 43833 Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCG-TCGCCACCGTATCGCTCGACTCC 39234 | | || ||||||| | ||| ||| || || | || || | | ||||| | || Sbjct 43832 GAATGCCTTCTTTGT-CTTGAATTTTTGCTTTAACGTTCTCAATAGTATCCGAGGGTTCT 43774 Query 39235 ACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || | ||||| |||| || |||| ||||| |||||||| ||||| Sbjct 43773 ACTTCTAAAGTGATGGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCAT 43724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429533061966635