Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq565 159 2e-34 seq451 147 1e-30 seq383 145 5e-30 seq161 143 2e-29 >seq565 Length=193464 Score = 159 bits (176), Expect = 2e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || |||||||| | || |||||||| |||||| | ||||| || | | Sbjct 150635 AATGCAAATATTTGTTAAAACTTTGACTGGAAAAACCATCACTTTGGAAGTAGAACCATC 150576 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| ||| | |||| | ||| |||||| ||||| |||||| | || ||||| || Sbjct 150575 GGATACTATCGAAAACGTTAAAGCAAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCA 150516 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||||||| || || |||||||| ||||||| | ||||| || |||||||| Sbjct 150515 ACAGCGTTTAATTTTCGCTGGCAAACAGTTGGAAGATGGCCGCACATTGTCTGATTACAA 150456 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 ||||||||| || |||||||| |||||||| || Sbjct 150455 CATACAAAAGGAATCCACATTGCATTTAGTATT 150423 Score = 158 bits (174), Expect = 8e-34 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || |||||||| | || |||||||| |||||| | ||||| || || || Sbjct 150862 ATGCAAATATTTGTTAAAACTTTGACTGGAAAAACCATCACTTTGGAAGTAGAATCGTCG 150803 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| | |||| | ||| |||||| ||||| |||||| | || ||||| ||| Sbjct 150802 GATACTATCGAAAACGTTAAAGCAAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCAA 150743 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || ||||| || ||||| ||||||||| ||||| || ||||||||| Sbjct 150742 CAGCGTTTGATCTTTGCTGGAAAACAGTTGGAAGACGGCCGCACGTTGTCTGATTACAAC 150683 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 ||||| ||||| |||||||| ||||| || || Sbjct 150682 ATACAGAAAGAATCCACATTGCATTTGGTATT 150651 Score = 152 bits (168), Expect = 3e-32 Identities = 175/233 (75%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 23606 TTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACT 23665 ||||||||||||| ||||| || || | || |||||||| ||||| | || ||||| Sbjct 151095 TTAAAATGCAGATCTTCGTGAAGACATTGACTGGAAAAACTATCACCTTGGAGGTTGAGC 151036 Query 23666 CCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCA 23724 | | || ||| |||| ||| ||||||| |||| || || ||||| ||||| || ||| Sbjct 151035 CATCCGATACTATTGAGAATGTTAAAACTAAAA-TTCAAGATAAAGAGGGTGTCCCACCA 150977 Query 23725 GATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGAT 23784 |||||||| ||||| || ||||| |||||||| ||||| | | ||||| | || Sbjct 150976 GATCAACAACGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCTCTGAC 150917 Query 23785 TACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||||||| || ||||| || ||| | ||||| |||||| | ||||| || || Sbjct 150916 TACAACATTCAGAAAGAATCGACACTCCATTTGGTTTTACGTTTGCGTGGTGG 150864 Score = 143 bits (158), Expect = 2e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| || ||||| ||||| | || || ||||| |||||| | |||||||| | Sbjct 159590 AAAATGCAAATCTTCGTAAAAACATTAACTGGCAAAACTATCACTTTGGAAGTTGAACCG 159531 Query 23668 ACGGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || ||| | |||| | ||||| | || | || ||||| |||||| | || ||||| Sbjct 159530 TCAGATACTATCGAAAATGTTAAAGCCAAGA-TTCAAGACAAGGAAGGTATTCCTCCAGA 159472 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || || ||||| || ||||||||||| ||||||||||||| |||||| || |||||| Sbjct 159471 CCAGCAACGTTTGATTTTTGCCGGCAAGCAACTGGAAGACGGACGCACCTTGTCCGATTA 159412 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || || ||||| || || ||||| || || | |||| || || Sbjct 159411 TAATATTCAGAAGGAGTCAACCTTGCATTTGGTCCTACGTCTGCGCGGTGG 159361 Score = 138 bits (152), Expect = 8e-28 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| ||||| | || || ||||| |||||| | ||||| || | | Sbjct 159131 ATGCAAATTTTCGTCAAAACATTGACTGGTAAAACCATCACTTTAGAAGTCGAGCCTTCC 159072 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | |||| || || || ||||| | || |||||||| Sbjct 159071 GATACCATTGAGAATGTCAAGGCTAAAA-TTCAAGATAAGGAAGGAATCCCCCCAGATCA 159013 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| || ||||| ||||||||| ||||||||| |||||| || ||||||||| Sbjct 159012 ACAACGTTTGATCTTTGCTGGCAAACAATTGGAAGACGGACGCACCTTGTCCGATTACAA 158953 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || ||||| || || ||||| ||| || | |||| || || Sbjct 158952 TATTCAGAAGGAGTCAACCTTGCATTTGGTTCTACGTCTGCGCGGTGG 158905 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| ||||| | || || || || ||||| | ||||| || | | Sbjct 159359 ATGCAAATTTTCGTCAAAACATTGACTGGCAAGACCATCACCTTAGAAGTCGAGCCTTCC 159300 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || |||||| || || ||||| | || ||||||||| Sbjct 159299 GACACAATTGAGAACGTCAAGGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAA 159240 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||||| || ||||| ||||||||| ||||||||| |||||| || ||||||||| Sbjct 159239 CAACGTTTGATCTTTGCTGGCAAACAATTGGAAGACGGACGCACCTTGTCCGATTACAAT 159180 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || ||||| || || ||||| || || | |||| || || Sbjct 159179 ATTCAGAAGGAGTCAACCTTGCATTTGGTCCTACGTCTGCGCGGTGG 159133 Score = 118 bits (130), Expect = 7e-22 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 23695 AAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAA 23754 |||||| || || ||||| | || ||||||||||| ||||| || ||||| |||||| Sbjct 156621 AAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAACAACGTTTGATCTTTGCTGGCAAA 156562 Query 23755 CAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACAT 23814 ||| ||||||||| |||||||||| |||||||| || || || ||||| ||||| ||| Sbjct 156561 CAATTGGAAGACGGACGCACTTTATCTGATTACAATATTCAGAAGGAGTCGACATTGCAT 156502 Query 23815 TTAGTTTTAAGGTTGCGAGGAGG 23837 || || || | ||||| || || Sbjct 156501 TTGGTCCTACGTTTGCGCGGTGG 156479 Score = 102 bits (112), Expect = 6e-17 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 23669 CGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||| ||| | |||| | ||| |||||| ||||| |||||| | || ||||| | Sbjct 145934 CGGATACTATCGAAAACGTTAAAGCAAAAATCCAAGACAAGGAAGGTATTCCTCCAGACC 145875 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 ||||||||||||| || || ||||||||| ||||||| | ||||| || ||||||| Sbjct 145874 AACAGCGTTTAATTTTCGCTGGCAAACAATTGGAAGATGGCCGCACATTGTCTGATTACA 145815 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||||||||| || || || Sbjct 145814 ACATACAAAAGGAATCTAC 145796 >seq451 Length=246926 Score = 147 bits (162), Expect = 1e-30 Identities = 173/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||| || |||||||| ||||| || || |||||||| || || || || Sbjct 37998 AATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCC 37939 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||||||| | |||| ||||| || ||| |||||||| || | || || || Sbjct 37938 TCGGACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGAC 37879 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || || || || || || || || ||| ||||||| | ||||| || |||||| Sbjct 37878 CAGCAACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGTCGCACATTGTCCGATTAT 37819 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGATCA 23841 || || |||||||| |||||||||||| | || || | |||||||| ||| || Sbjct 37818 AATATTCAAAAAGAATCCACATTACATCTTGTGTTGCGTTTGCGAGGTGGAGCA 37765 >seq383 Length=330124 Score = 145 bits (160), Expect = 5e-30 Identities = 178/239 (74%), Gaps = 3/239 (1%) Strand=Plus/Plus Query 23601 ATTACTTAAAA-TGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAG 23659 ||| ||||||| ||||||| ||||| || || | || || ||||| |||||| | || | Sbjct 43485 ATTTCTTAAAAATGCAGATCTTCGTGAAGACATTGACTGGCAAAACTATCACTTTAGAGG 43544 Query 23660 TTGACTCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTA 23718 |||| | | |||||| |||| ||| ||||| | |||||| || || ||||| | Sbjct 43545 TTGAGCCGTCTGACACTATTGAGAATGTTAAAGC-TAAAATTCAAGATAAGGAAGGAATC 43603 Query 23719 CCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTA 23778 ||||||||||| ||||||||||| ||||| || || ||| |||| || | || ||| | Sbjct 43604 CCGCCAGATCAGCAGCGTTTAATTTTTGCTGGAAAGCAATTGGAGGATGGCCGTACTCTT 43663 Query 23779 GGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||| |||||||| |||||||| || || |||||||| | | ||||| || || Sbjct 43664 TCGGATTATAACATACAGAAAGAGTCAACTTTGCATTTAGTCCTGCGTTTGCGTGGGGG 43722 Score = 138 bits (152), Expect = 8e-28 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| | || || ||||| |||||| | ||||| || || || Sbjct 43724 ATGCAGATCTTTGTAAAAACTTTGACAGGTAAAACCATCACTTTAGAAGTAGAACCCTCG 43783 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||| || ||||| |||||| || ||||||||||| | || |||||||| Sbjct 43784 GATACTATTGAGAACGTTAAAGCAAAAA-TTCAAGACAAAGAAGGCATTCCTCCAGATCA 43842 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| ||||| |||||||| || || |||||||| | ||||| || || || || Sbjct 43843 ACAGCGCTTAATTTTTGCCGGTAAGCAGCTGGAAGATGGCCGCACCTTGTCAGACTATAA 43902 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || ||||| || || || | ||||| || ||| | | || ||||| Sbjct 43903 TATCCAAAAGGAATCTACGCTCCATTTGGTGTTACGTCTTCGCGGAGG 43950 >seq161 Length=579164 Score = 143 bits (158), Expect = 2e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| ||||| |||||||| || || || ||||| || ||| | |||||||| | Sbjct 362453 AAAATGCAAATTTTTGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGCCT 362394 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | |||||| |||||| | || |||||| || |||||||| | || |||||| Sbjct 362393 TCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAGAT 362334 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||||| ||||| || || || || |||||| ||||||| | || |||||| ||||| Sbjct 362333 CAACAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGGCGGACTTTATCGGATTAT 362274 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGT 23819 ||||||||||| ||||| || || || || || Sbjct 362273 AACATACAAAAGGAGTCGACCTTGCACTTGGT 362242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337999733816660