Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq451 152 1e-31 seq565 149 1e-30 seq383 136 9e-27 seq67 111 4e-19 seq74 107 5e-18 seq899 102 2e-16 seq797 100 7e-16 seq510 95.1 3e-14 >seq451 Length=246926 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225505 ACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCT 225564 ||||| || | |||||||||||||| | ||| ||||||| ||| || | |||||||| Sbjct 37787 ACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGGACAATGTGCGACCATCTTCC 37846 Query 225565 AGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGG 225624 | ||||| |||||||| || | |||||| |||||||| ||||| || || ||||| || Sbjct 37847 AATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGAATTCCCTCTTTGTCCTGA 37906 Query 225625 ATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTG 225684 ||||| || ||| |||||| ||||| |||| ||| || || | ||||| |||||| Sbjct 37907 ATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACCTCAAGAGTGATGGTCTTG 37966 Query 225685 CCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| | ||||||| || | ||||| || Sbjct 37967 CCCGTTAGGGTTTTTACAAAAATCTGCATATT 37998 >seq565 Length=193464 Score = 149 bits (164), Expect = 1e-30 Identities = 154/199 (77%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 |||||||| ||||| | |||||||| | ||| || | |||||||| | ||| || ||| Sbjct 150438 GTGGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCATCTTCCAACTGTTTGCCA 150497 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 ||||| || | || |||||||| || ||||||||||||||||||||||| |||||| || Sbjct 150498 GCGAAAATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGAT-TTTTGCTTT 150556 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 || |||||| || || || | ||| || || || ||||| || || || |||||||| Sbjct 150557 AACGTTTTCGATAGTATCCGATGGTTCTACTTCCAAAGTGATGGTTTTTCCAGTCAAAGT 150616 Query 225696 TTTTATGAACACTTGCATT 225714 ||| | || | ||||||| Sbjct 150617 TTTAACAAATATTTGCATT 150635 Score = 143 bits (158), Expect = 6e-29 Identities = 152/198 (77%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 ||||||||||| || | |||||||| | ||| || | || ||||| | ||| || ||| Sbjct 150666 GTGGATTCTTTCTGTATGTTGTAATCAGACAACGTGCGGCCGTCTTCCAACTGTTTTCCA 150725 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 || ||||| | || |||||||| || ||||||||||||||||||||||| |||||| || Sbjct 150726 GCAAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGAT-TTTTGCTTT 150784 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 || |||||| || || || | ||| || || || ||||| || || || |||||||| Sbjct 150785 AACGTTTTCGATAGTATCCGACGATTCTACTTCCAAAGTGATGGTTTTTCCAGTCAAAGT 150844 Query 225696 TTTTATGAACACTTGCAT 225713 ||| | || | |||||| Sbjct 150845 TTTAACAAATATTTGCAT 150862 Score = 140 bits (154), Expect = 8e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || || || || || | ||| ||||||| ||| || | || ||||| || ||||| || Sbjct 159391 GTTGACTCCTTCTGAATATTATAATCGGACAAGGTGCGTCCGTCTTCCAGTTGCTTGCCG 159450 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || || || | ||||| ||||| || |||||||||||||||||||| ||||| || Sbjct 159451 GCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGAATCTTGGCTTTA 159510 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 ||| |||||| || ||||| | ||| || || || ||||| || ||||| || || ||| Sbjct 159511 ACATTTTCGATAGTATCTGACGGTTCAACTTCCAAAGTGATAGTTTTGCCAGTTAATGTT 159570 Query 225697 TTTATGAACACTTGCATTTT 225716 |||| ||| | ||||||||| Sbjct 159571 TTTACGAAGATTTGCATTTT 159590 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || || || || || | ||||||||||| ||| || | || ||||| | || || ||| Sbjct 159163 GTTGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGTCCGTCTTCCAATTGTTTGCCA 159222 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || ||||| | |||||||| || || || || |||||||| ||||| || || ||| Sbjct 159223 GCAAAGATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTGAATTTTAGCCTTG 159282 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 || || || ||||| || | || || ||||| ||||| |||||||| ||||| ||| Sbjct 159283 ACGTTCTCAATTGTGTCGGAAGGCTCGACTTCTAAGGTGATGGTCTTGCCAGTCAATGTT 159342 Query 225697 TTTATGAACACTTGCAT 225713 || | ||| | |||||| Sbjct 159343 TTGACGAAAATTTGCAT 159359 Score = 114 bits (126), Expect = 3e-20 Identities = 112/143 (78%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || | ||| ||||| ||||| ||||| | |||||||| | ||| || Sbjct 145772 CGGAGACGCAGTACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGACAATGTG 145831 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| | || || |||||||| || | || |||||||| || ||||||||| Sbjct 145832 CGGCCATCTTCCAATTGTTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGGAATACCT 145891 Query 225613 TCCTTGTCTTGGATCTTTTGCTT 225635 |||||||||||||| |||||||| Sbjct 145892 TCCTTGTCTTGGAT-TTTTGCTT 145913 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || || || || || | ||||||||||| ||| || | || ||||| | || || ||| Sbjct 158935 GTTGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGTCCGTCTTCCAATTGTTTGCCA 158994 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || ||||| | |||||||| || || || || |||||||| ||||| || || ||| Sbjct 158995 GCAAAGATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTGAATTTTAGCCTTG 159054 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 ||| || ||||| || || | || || ||||| ||||| || || || ||||| ||| Sbjct 159055 ACATTCTCAATGGTATCGGAAGGCTCGACTTCTAAAGTGATGGTTTTACCAGTCAATGTT 159114 Query 225697 TTTATGAACACTTGCAT 225713 || | ||| | |||||| Sbjct 159115 TTGACGAAAATTTGCAT 159131 >seq383 Length=330124 Score = 136 bits (150), Expect = 9e-27 Identities = 154/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 ||||| || ||||| ||||||| ||| || || | ||| || | |||||||| |||||| Sbjct 43926 TGGAGCGTAGATTCCTTTTGGATATTATAGTCTGACAAGGTGCGGCCATCTTCCAGCTGC 43867 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || || || || | || ||||| || || ||||| ||||| |||||||| || ||| Sbjct 43866 TTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGGAATGCCTTCTTTGTCTTGAAT-TTT 43808 Query 225631 TGCTTCACAGCT-TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||||| | | | || || || || |||| ||| || ||||| ||||| || || || || Sbjct 43807 TGCTTTAACGTTCTCAATAGTATCCGAGGGTTCTACTTCTAAAGTGATGGTTTTACCTGT 43748 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 ||||||||||| || | ||||| Sbjct 43747 CAAAGTTTTTACAAAGATCTGCAT 43724 >seq67 Length=1012005 Score = 111 bits (122), Expect = 4e-19 Identities = 84/99 (85%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||||||||||||||||||||| ||||||||||||||||| |||||||| || || || | Sbjct 106465 TTCAGGATGACCAAAAAATCAAAATAAATGTTGATAAAGAATAGGATCTCCCCCACCAGC 106406 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||| |||||||| ||||| ||||| | ||||||||| Sbjct 106405 TGGGTCAAAAAATGATGTATTTAAATTACGATCAGTTAA 106367 >seq74 Length=928452 Score = 107 bits (118), Expect = 5e-18 Identities = 83/99 (84%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||||||||| ||||||||||| |||| |||||||||||| |||||||| || || || | Sbjct 364738 TTCAGGATGGCCAAAAAATCAAAATAGATGTTGATAAAGAATAGGATCTCCCCCTCCAGC 364679 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 |||||||||||| ||||| ||||| | ||||||||| Sbjct 364678 TGGATCAAAAAATGAGGTATTTAAATTACGATCAGTTAA 364640 >seq899 Length=65883 Score = 102 bits (112), Expect = 2e-16 Identities = 100/128 (78%), Gaps = 1/128 (1%) Strand=Plus/Minus Query 7735 TTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCT 7794 |||||||| ||||| ||||| || ||||||||||||| ||||||||||| | | | Sbjct 17188 TTGGTAAGGTTCTTCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCC 17129 Query 7795 TCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACG 7853 |||||| || |||||||||| | |||||| | || |||||||| ||| || || | | Sbjct 17128 CCCGTCAATTCCTTTGAGTTTCACTCTTGCGAGCATACTACTCAGGCGGAGTACTTAATG 17069 Query 7854 CGTTAGCT 7861 |||||||| Sbjct 17068 CGTTAGCT 17061 >seq797 Length=92859 Score = 100 bits (110), Expect = 7e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 |||||||||||||| ||||| || ||||||||||| || ||||||||||||| ||||| Sbjct 34250 AATATTTGACCATCTGTAATTGAAATAACATTTGTTGGAATATAAGCAGAAATGTCACCC 34191 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTT 4583 ||||| ||||| |||| || | |||||| | |||||| ||| | | ||| Sbjct 34190 GCTTGCGTTTCTACAATTGGCAGGGCTGTAATACTTCCACCCCCATATTCTTT 34138 >seq510 Length=219340 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||||||||||||||||||||| ||||||||||||||||| |||||||| || || || | Sbjct 181488 TTCAGGATGACCAAAAAATCAAAATAAATGTTGATAAAGAATAGGATCTCCCCCACCAGC 181429 Query 370732 TGGATCAAAAAA 370743 || ||||||||| Sbjct 181428 TGAATCAAAAAA 181417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192494606062130