Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_031126.1 Length=244840 Score E Sequences producing significant alignments: (Bits) Value seq899 129 9e-25 seq1056 84.2 3e-11 >seq899 Length=65883 Score = 129 bits (142), Expect = 9e-25 Identities = 185/257 (72%), Gaps = 13/257 (5%) Strand=Plus/Plus Query 3027 GCACCTAATTTGGCGCGGTACTCAAGCGGTCAACGAGAGCAGACTGTAAATCTGTTGCCT 3086 ||||| ||||| | |||| | ||| || ||| | | | |||||||| || | | ||| Sbjct 10430 GCACCATTTTTGGAGGGGTAGTGAAGTGGCCAAACACATCTGACTGTAACTCAGCT-CCT 10488 Query 3087 TCGGGCTTCGTAGGTTCAAATCCTTCCCTCGCCACCAAATTC---------TAGGGGTAT 3137 ||||| |||| ||||| ||||| |||| | |||||| || | ||| ||| Sbjct 10489 TCGGG-TTCGGGGGTTCGAATCCCTCCCCCTCCACCATCTTTGTTAAAACATTGGGCTAT 10547 Query 3138 AGCCAAGCGGTAAGGCCCAGGGCTTTGATCCCTGTATGCTCTGGTTCAAATCCAGATGCC 3197 |||||||||||||||| ||| |||||| ||| |||| ||||||||||||||| | | Sbjct 10548 AGCCAAGCGGTAAGGCAAAGGACTTTGACTCCTTCATGCGCTGGTTCAAATCCAGCTAGC 10607 Query 3198 CCTTCCATTTTATTGT-CTCGTAGCTCAGTTGGTCAGAGCGCTCGCCTGATAAGCGGGAG 3256 || |||||| | | | || ||||||||||||| ||||| | || ||| | | | Sbjct 10608 CCAGCCATTTAAGTCTCCTGTTAGCTCAGTTGGT-AGAGCATCTGGCTTTTAACCAGTGG 10666 Query 3257 GTCAGTGGTTCAAGTCC 3273 |||| ||||||||||| Sbjct 10667 GTCAAAGGTTCAAGTCC 10683 >seq1056 Length=29028 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/110 (77%), Gaps = 3/110 (3%) Strand=Plus/Plus Query 3208 TATTGTCTCGTAGCTCAGTTGGTCAGAGCGCTCGCCTGATAAGCGGGAGGTCAGTGGTTC 3267 ||| | || ||||||||| ||| ||||| | | ||||||||| | |||||||||||||| Sbjct 1038 TATAGGCTTGTAGCTCAGACGGTTAGAGCACACCCCTGATAAGGGTGAGGTCAGTGGTTC 1097 Query 3268 AAGTCCACTCGAGACAACCAATTCGGTTCTGTAGCTCAGTCGGTAGAGCA 3317 |||||||||| || | | || || || ||||||| ||||||||| Sbjct 1098 AAGTCCACTCAAGCCTAAAAA---GGGGCTATAGCTCAACTGGTAGAGCA 1144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 783336548160000