Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014
-05-08] 2,395 sequences; 374,774,708 total letters
Query= NC_031129.1
Length=103445
Score E
Sequences producing significant alignments: (Bits) Value
seq1006 206 2e-48
seq912 84.2 1e-11
seq214 84.2 1e-11
seq1188 82.4 5e-11
seq1064 82.4 5e-11
>seq1006
Length=36943
Score = 206 bits (228), Expect = 2e-48
Identities = 485/727 (67%), Gaps = 14/727 (2%)
Strand=Plus/Minus
Query 96700 ATAGTTATCAAACCGTGAGTATTGGCCGTTAAAAGCCAATCTCACCGTGCCAATTGGGCC 96759
||| |||||||| | || ||| || ||||||| | | | || || ||||| ||
Sbjct 9852 ATAATTATCAAATCTAGACCATTTTCCATTAAAAGTTAGACGAATTGTTCCGATTGGTCC 9793
Query 96760 ATTTCGTTGCTTTCCGATAATTACCTCGGCAATGCCCTTCATTTCGCTATCCGGGTGATA 96819
|| ||||| ||||| | ||| | || || || || || | || |||| |||||
Sbjct 9792 GTTACGTTGTTTTCCTAAAATAATTTCTGCTATCCCTTTTGTCTCACTATTTTCATGATA 9733
Query 96820 AACTTCGTCGCGATACAAAAACATGATCAGGTCTGCGTCCTGCTCAATTGCTCCTGATTC 96879
||||||||| ||||| | |||||| || | ||||| || ||||| |||| ||| |||||
Sbjct 9732 AACTTCGTCACGATAGATAAACATAATAACATCTGCATCTTGCTCGATTGATCCAGATTC 9673
Query 96880 ACGTAAATCTGAATTTACCGGTCGTTTGTCCGCACGCTGTTC-AAGCGATCGATTAAGTT 96938
| ||||||||||||||| |||| ||| || | | ||||| || | | |||||||| |
Sbjct 9672 TCTTAAATCTGAATTTACTGGTCTTTTATCAGATCTTTGTTCTAAACTA-CGATTAAGCT 9614
Query 96939 GTGACAATGCCACCACCGGTACTTGTAATTCCTTCGCCAACGCCTTCAGTGAGCGAGAAA 96998
| ||||| || | || || ||||| | ||| || ||||| || || | || | ||||
Sbjct 9613 GCGACAAAGCAATAACTGGAACTTGAAGTTCTTTTGCCAAGGCTTTTAAAGATCTTGAAA 9554
Query 96999 TCTCGGCAATTTCCAGCGTTCGGTTATCTTGCAGCTCCGGGACGC--GCATAAGTTGCAG 97056
| || |||||||| | |||| ||| || | || | ||| |||||||||| ||
Sbjct 9553 TTTCTGCAATTTCTAAAGTTCTATTA--TTAAATATCGTAGGCGCATGCATAAGTTGAAG 9496
Query 97057 GTAGTCGATCATAATCATGCTCAAACCACCATTTTCTTTATAAACACGACGAGCGCGGGA 97116
|| || |||||||| | || ||||| ||| ||| ||| | | | | ||
Sbjct 9495 ATAATCTATCATAATTAAACTTAAACCTTCATGTTCACGGAAAATTCTTCTTGATCTAGA 9436
Query 97117 ACGTAGCTCTGTCGGCGTCAGGGCGCTT----GAGTCATCAATAAAAATATTCTGCTTGT 97172
|| | ||||| | || | |||| || ||||||||| ||||||||| || |
Sbjct 9435 TCGAATTTCTGTTGCTGTTA----GCTTAGAAGAATCATCAATATAAATATTCTTTTTTT 9380
Query 97173 CCAACAGAATACCCATTGCGCCAGAAACCCGCGCCCAATCCTCGTCGTTAAGTTGCCCTG 97232
| | ||| | | || || | || | |||||| || | | | || || |
Sbjct 9379 TTAGTAAAATCTCTACTGTATGTGATATACGTGACCAATCTTCTTTTGTCAACTGACCAG 9320
Query 97233 TTCGAATACGAGTCTGATCAACGCGTGCAAGAGAAGCCAGTGAGCGCATCATCAGCTGGT 97292
||| | |||| | ||||| || | || ||||||| ||| || ||||| | || |
Sbjct 9319 TTCTTAAACGACTTTGATCGACTCTTGATAGAGAAGAAAGTATTCGTATCATAATTTGTT 9260
Query 97293 GGCTCGGCATCTCAAGGCTAAAAACCAATACGGGCTTATCGTTACGAACTGCGGCATTTT 97352
|| ||||| || | ||||||| || || || || || | | | ||| |||| ||
Sbjct 9259 CGCCTGGCATTTCTAAACTAAAAATTAAAACTGGTTTTTCTTCATTTATTGCTGCATATT 9200
Query 97353 CGACGAGATTCATCGCAAACGTGGTCTTCCCCATAGATGGGCGGGCGGCGACAATGATGA 97412
| | ||| || ||||| || || |||||||| || || || || || | |||||| |
Sbjct 9199 CACACAAATTTATAGCAAAAGTTGTTTTCCCCATTGAAGGTCGCGCAGCAATAATGATAA 9140
Query 97413 GATCGGA 97419
|||| ||
Sbjct 9139 GATCTGA 9133
Score = 95.1 bits (104), Expect = 8e-15
Identities = 97/127 (76%), Gaps = 0/127 (0%)
Strand=Plus/Minus
Query 44803 TCCCTTCGATGTAGACCTGAGAACCTTTTCGTAAATACTCACTCGCAATTTCAGCAAGTT 44862
|||||||||| || || ||||| |||||||||||||| || | || |||||||| | ||
Sbjct 10208 TCCCTTCGATATATACTTGAGATCCTTTTCGTAAATATTCTCCGGCTATTTCAGCTAATT 10149
Query 44863 TTCCGAACAAAACGACTTTATGCCATTCTGTTTGCTCTTTCTGTTGGCCCGTTTGCTTGT 44922
|||| || | ||| ||| | |||||||| |||| ||||| || || || | || |
Sbjct 10148 TTCCAAAAATAACTACTCTGTGCCATTCGGTTTTTTCTTTGATTTCTCCGGTATTTTTAT 10089
Query 44923 CGCGCCA 44929
|||||||
Sbjct 10088 CGCGCCA 10082
>seq912
Length=64277
Score = 84.2 bits (92), Expect = 1e-11
Identities = 59/66 (89%), Gaps = 1/66 (2%)
Strand=Plus/Minus
Query 99554 TAACGGACTCGAACCGCTGACATCCTGCTTACAAGGCAGGCGCTCTACCAACTGAGCTAA 99613
||||||||| ||||||||||| ||||||| |||||||||||||| |||||||||||||
Sbjct 33788 TAACGGACTTGAACCGCTGACCACCTGCTTGTAAGGCAGGCGCTCTCCCAACTGAGCTAA 33729
Query 99614 -ACCGG 99618
|||||
Sbjct 33728 CACCGG 33723
>seq214
Length=1202
Score = 84.2 bits (92), Expect = 1e-11
Identities = 157/224 (70%), Gaps = 5/224 (2%)
Strand=Plus/Minus
Query 64054 TGGCTTTGTTGAATAAATCAGATTTCGGGTAAGTCTCCCCCGTAGCGGGTTGTGTTTTCA 64113
|||||||||||||||||| ||| | | | | ||||||| |||| | | | | || |
Sbjct 262 TGGCTTTGTTGAATAAATAAGAACTTGTG-ACTACTCCCCCCTAGCAGATCGATTGTT-A 205
Query 64114 GGCAATACGCACGCTTTCAGGCATA-CCTGCTTTCGTCATTTTGTTCAGCGCTCGTACCA 64172
|| || || | ||| | ||||| ||| |||||||||||| |||||| ||||
Sbjct 204 TGCGATCCGGATGCTGTTCGGCATTTCCTAACAGCGTCATTTTGTTAAGCGCTTTGACCA 145
Query 64173 GGGCCATAGCCTCCGCAACCTGACCATCGTAGTCACGCAGCGTCAG-TGAACCCCCGAAC 64231
||||| ||||| | ||||| |||| ||||||||||| | || ||| | ||| |
Sbjct 144 TCGCCATTGCCTCACCTACCTGCGCATCATAGTCACGCAGACTTAGATGATCGCCC-ATA 86
Query 64232 AGCTGTTTTACCCGGTACATCGCCGTTTCCGCTATCGAGCGACG 64275
||| ||| | |||| | || || ||||| || ||||||||
Sbjct 85 AGCGTTTTGAACCGGAATATAGCTGTTTCAGCCGCTGAGCGACG 42
>seq1188
Length=10746
Score = 82.4 bits (90), Expect = 5e-11
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 98319 TGGCCCCTACCGGACTTGAACCGGTGACCGTGCGATTATGAGTCGCCAGCTCTAACCACT 98378
|||||| | | ||| ||||||| | |||| |||||||||||||||| ||||| ||| ||
Sbjct 9308 TGGCCCTTGCTGGATTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTTACCTCT 9249
Query 98379 GAGCTAAAGGGCC 98391
|||||||||||||
Sbjct 9248 GAGCTAAAGGGCC 9236
>seq1064
Length=27237
Score = 82.4 bits (90), Expect = 5e-11
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 98319 TGGCCCCTACCGGACTTGAACCGGTGACCGTGCGATTATGAGTCGCCAGCTCTAACCACT 98378
|||||| | | ||| ||||||| | |||| |||||||||||||||| ||||| ||| ||
Sbjct 26809 TGGCCCTTGCTGGATTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTTACCTCT 26750
Query 98379 GAGCTAAAGGGCC 98391
|||||||||||||
Sbjct 26749 GAGCTAAAGGGCC 26737
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 330889541362570
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |