Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq1006 206 2e-48 seq912 84.2 1e-11 seq214 84.2 1e-11 seq1188 82.4 5e-11 seq1064 82.4 5e-11 >seq1006 Length=36943 Score = 206 bits (228), Expect = 2e-48 Identities = 485/727 (67%), Gaps = 14/727 (2%) Strand=Plus/Minus Query 96700 ATAGTTATCAAACCGTGAGTATTGGCCGTTAAAAGCCAATCTCACCGTGCCAATTGGGCC 96759 ||| |||||||| | || ||| || ||||||| | | | || || ||||| || Sbjct 9852 ATAATTATCAAATCTAGACCATTTTCCATTAAAAGTTAGACGAATTGTTCCGATTGGTCC 9793 Query 96760 ATTTCGTTGCTTTCCGATAATTACCTCGGCAATGCCCTTCATTTCGCTATCCGGGTGATA 96819 || ||||| ||||| | ||| | || || || || || | || |||| ||||| Sbjct 9792 GTTACGTTGTTTTCCTAAAATAATTTCTGCTATCCCTTTTGTCTCACTATTTTCATGATA 9733 Query 96820 AACTTCGTCGCGATACAAAAACATGATCAGGTCTGCGTCCTGCTCAATTGCTCCTGATTC 96879 ||||||||| ||||| | |||||| || | ||||| || ||||| |||| ||| ||||| Sbjct 9732 AACTTCGTCACGATAGATAAACATAATAACATCTGCATCTTGCTCGATTGATCCAGATTC 9673 Query 96880 ACGTAAATCTGAATTTACCGGTCGTTTGTCCGCACGCTGTTC-AAGCGATCGATTAAGTT 96938 | ||||||||||||||| |||| ||| || | | ||||| || | | |||||||| | Sbjct 9672 TCTTAAATCTGAATTTACTGGTCTTTTATCAGATCTTTGTTCTAAACTA-CGATTAAGCT 9614 Query 96939 GTGACAATGCCACCACCGGTACTTGTAATTCCTTCGCCAACGCCTTCAGTGAGCGAGAAA 96998 | ||||| || | || || ||||| | ||| || ||||| || || | || | |||| Sbjct 9613 GCGACAAAGCAATAACTGGAACTTGAAGTTCTTTTGCCAAGGCTTTTAAAGATCTTGAAA 9554 Query 96999 TCTCGGCAATTTCCAGCGTTCGGTTATCTTGCAGCTCCGGGACGC--GCATAAGTTGCAG 97056 | || |||||||| | |||| ||| || | || | ||| |||||||||| || Sbjct 9553 TTTCTGCAATTTCTAAAGTTCTATTA--TTAAATATCGTAGGCGCATGCATAAGTTGAAG 9496 Query 97057 GTAGTCGATCATAATCATGCTCAAACCACCATTTTCTTTATAAACACGACGAGCGCGGGA 97116 || || |||||||| | || ||||| ||| ||| ||| | | | | || Sbjct 9495 ATAATCTATCATAATTAAACTTAAACCTTCATGTTCACGGAAAATTCTTCTTGATCTAGA 9436 Query 97117 ACGTAGCTCTGTCGGCGTCAGGGCGCTT----GAGTCATCAATAAAAATATTCTGCTTGT 97172 || | ||||| | || | |||| || ||||||||| ||||||||| || | Sbjct 9435 TCGAATTTCTGTTGCTGTTA----GCTTAGAAGAATCATCAATATAAATATTCTTTTTTT 9380 Query 97173 CCAACAGAATACCCATTGCGCCAGAAACCCGCGCCCAATCCTCGTCGTTAAGTTGCCCTG 97232 | | ||| | | || || | || | |||||| || | | | || || | Sbjct 9379 TTAGTAAAATCTCTACTGTATGTGATATACGTGACCAATCTTCTTTTGTCAACTGACCAG 9320 Query 97233 TTCGAATACGAGTCTGATCAACGCGTGCAAGAGAAGCCAGTGAGCGCATCATCAGCTGGT 97292 ||| | |||| | ||||| || | || ||||||| ||| || ||||| | || | Sbjct 9319 TTCTTAAACGACTTTGATCGACTCTTGATAGAGAAGAAAGTATTCGTATCATAATTTGTT 9260 Query 97293 GGCTCGGCATCTCAAGGCTAAAAACCAATACGGGCTTATCGTTACGAACTGCGGCATTTT 97352 || ||||| || | ||||||| || || || || || | | | ||| |||| || Sbjct 9259 CGCCTGGCATTTCTAAACTAAAAATTAAAACTGGTTTTTCTTCATTTATTGCTGCATATT 9200 Query 97353 CGACGAGATTCATCGCAAACGTGGTCTTCCCCATAGATGGGCGGGCGGCGACAATGATGA 97412 | | ||| || ||||| || || |||||||| || || || || || | |||||| | Sbjct 9199 CACACAAATTTATAGCAAAAGTTGTTTTCCCCATTGAAGGTCGCGCAGCAATAATGATAA 9140 Query 97413 GATCGGA 97419 |||| || Sbjct 9139 GATCTGA 9133 Score = 95.1 bits (104), Expect = 8e-15 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 44803 TCCCTTCGATGTAGACCTGAGAACCTTTTCGTAAATACTCACTCGCAATTTCAGCAAGTT 44862 |||||||||| || || ||||| |||||||||||||| || | || |||||||| | || Sbjct 10208 TCCCTTCGATATATACTTGAGATCCTTTTCGTAAATATTCTCCGGCTATTTCAGCTAATT 10149 Query 44863 TTCCGAACAAAACGACTTTATGCCATTCTGTTTGCTCTTTCTGTTGGCCCGTTTGCTTGT 44922 |||| || | ||| ||| | |||||||| |||| ||||| || || || | || | Sbjct 10148 TTCCAAAAATAACTACTCTGTGCCATTCGGTTTTTTCTTTGATTTCTCCGGTATTTTTAT 10089 Query 44923 CGCGCCA 44929 ||||||| Sbjct 10088 CGCGCCA 10082 >seq912 Length=64277 Score = 84.2 bits (92), Expect = 1e-11 Identities = 59/66 (89%), Gaps = 1/66 (2%) Strand=Plus/Minus Query 99554 TAACGGACTCGAACCGCTGACATCCTGCTTACAAGGCAGGCGCTCTACCAACTGAGCTAA 99613 ||||||||| ||||||||||| ||||||| |||||||||||||| ||||||||||||| Sbjct 33788 TAACGGACTTGAACCGCTGACCACCTGCTTGTAAGGCAGGCGCTCTCCCAACTGAGCTAA 33729 Query 99614 -ACCGG 99618 ||||| Sbjct 33728 CACCGG 33723 >seq214 Length=1202 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/224 (70%), Gaps = 5/224 (2%) Strand=Plus/Minus Query 64054 TGGCTTTGTTGAATAAATCAGATTTCGGGTAAGTCTCCCCCGTAGCGGGTTGTGTTTTCA 64113 |||||||||||||||||| ||| | | | | ||||||| |||| | | | | || | Sbjct 262 TGGCTTTGTTGAATAAATAAGAACTTGTG-ACTACTCCCCCCTAGCAGATCGATTGTT-A 205 Query 64114 GGCAATACGCACGCTTTCAGGCATA-CCTGCTTTCGTCATTTTGTTCAGCGCTCGTACCA 64172 || || || | ||| | ||||| ||| |||||||||||| |||||| |||| Sbjct 204 TGCGATCCGGATGCTGTTCGGCATTTCCTAACAGCGTCATTTTGTTAAGCGCTTTGACCA 145 Query 64173 GGGCCATAGCCTCCGCAACCTGACCATCGTAGTCACGCAGCGTCAG-TGAACCCCCGAAC 64231 ||||| ||||| | ||||| |||| ||||||||||| | || ||| | ||| | Sbjct 144 TCGCCATTGCCTCACCTACCTGCGCATCATAGTCACGCAGACTTAGATGATCGCCC-ATA 86 Query 64232 AGCTGTTTTACCCGGTACATCGCCGTTTCCGCTATCGAGCGACG 64275 ||| ||| | |||| | || || ||||| || |||||||| Sbjct 85 AGCGTTTTGAACCGGAATATAGCTGTTTCAGCCGCTGAGCGACG 42 >seq1188 Length=10746 Score = 82.4 bits (90), Expect = 5e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 98319 TGGCCCCTACCGGACTTGAACCGGTGACCGTGCGATTATGAGTCGCCAGCTCTAACCACT 98378 |||||| | | ||| ||||||| | |||| |||||||||||||||| ||||| ||| || Sbjct 9308 TGGCCCTTGCTGGATTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTTACCTCT 9249 Query 98379 GAGCTAAAGGGCC 98391 ||||||||||||| Sbjct 9248 GAGCTAAAGGGCC 9236 >seq1064 Length=27237 Score = 82.4 bits (90), Expect = 5e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 98319 TGGCCCCTACCGGACTTGAACCGGTGACCGTGCGATTATGAGTCGCCAGCTCTAACCACT 98378 |||||| | | ||| ||||||| | |||| |||||||||||||||| ||||| ||| || Sbjct 26809 TGGCCCTTGCTGGATTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTTACCTCT 26750 Query 98379 GAGCTAAAGGGCC 98391 ||||||||||||| Sbjct 26749 GAGCTAAAGGGCC 26737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330889541362570