Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq383 129 1e-24 seq161 109 1e-18 seq565 91.5 3e-13 >seq383 Length=330124 Score = 129 bits (142), Expect = 1e-24 Identities = 160/217 (74%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||| | ||| |||||||| || ||||| ||||| | | ||| | ||||| Sbjct 43707 AGGACTAAATGCAAAGTTGACTCTTTCTGTATGTTATAATCCGAAAGAGTACGGCCATCC 43648 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || | ||||| || || || || | | |||||| || | || |||||||||||| | Sbjct 43647 TCCAATTGCTTT--CCAGCAAAAATTAAACGCTGCTGATCTGGCGGGATTCCTTCCTTAT 43590 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 |||||||||| ||| ||| |||| | |||| || ||| || || | ||| |||| Sbjct 43589 CTTGAATTTTAGCTTTAACATTCTCAATAGTGTCAGACGGCTCAACCTCTAAAGTGATAG 43530 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||||| || | ||||||||||||| ||||||||| Sbjct 43529 TTTTGCCAGTCAATGTCTTCACGAAGATCTGCATTTT 43493 Score = 84.2 bits (92), Expect = 5e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| || ||||| || |||||||| || || || | || || | |||||||| || Sbjct 43927 ATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGACAAGGTGCGGCCATCTTCCAGCTG 43868 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 || ||||| || || | | ||| || || | | || ||||| || ||||||||||| Sbjct 43867 CTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 43808 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 | ||| || |||| | | || || |||||||| | ||| || ||||| || || Sbjct 43807 TGCTTTAACGTTCTCAATAGTATCCGAGGGTTCTACTTCTAAAGTGATGGTTTTACCTGT 43748 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 | ||| || || |||| |||||| Sbjct 43747 CAAAGTTTTTACAAAGATCTGCAT 43724 >seq161 Length=579164 Score = 109 bits (120), Expect = 1e-18 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || ||||| ||||| ||||| ||||| | |||||| | ||||||||| | ||| || Sbjct 362254 GTCGACTCCTTTTGTATGTTATAATCCGATAAAGTCCGCCCATCTTCCAATTGTTTACCA 362313 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 ||||| || | | || || || | | || ||||| || || |||||||| ||| Sbjct 362314 GCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTG 362373 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | |||| ||| ||| ||||| | ||||||||||||||| || ||||| Sbjct 362374 ACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTT 362433 Query 152088 TTCACGAAGACCTGCATTTT 152107 || || || | |||||||| Sbjct 362434 TTAACAAAAATTTGCATTTT 362453 >seq565 Length=193464 Score = 91.5 bits (100), Expect = 3e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||| | || ||||| || || || || ||||||| || || | || ||| Sbjct 159376 AGGACCAAATGCAAGGTTGACTCCTTCTGAATATTATAATCGGACAAGGTGCGTCCGTCT 159435 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| || || | | |||||||| | | || |||||||| ||| Sbjct 159436 TCCAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCTTCCTTGTCT 159495 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || ||| ||| | || | | ||||| || ||||| | ||| |||||| Sbjct 159496 TGAATCTTGGCTTTAACATTTTCGATAGTATCTGACGGTTCAACTTCCAAAGTGATAGTT 159555 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || | || || ||||||| |||||||| Sbjct 159556 TTGCCAGTTAATGTTTTTACGAAGATTTGCATTTT 159590 Score = 89.7 bits (98), Expect = 1e-12 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || ||||| || || || |||||||||| || || | || ||||| | ||| || Sbjct 158935 GTTGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGTCCGTCTTCCAATTGTTTGCCA 158994 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || ||||| | | || || || | | |||||||||||| ||||||||||| ||| Sbjct 158995 GCAAAGATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTGAATTTTAGCCTTG 159054 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| |||| | | | || ||| ||| ||||| | ||| || ||||| || || | || Sbjct 159055 ACATTCTCAATGGTATCGGAAGGCTCGACTTCTAAAGTGATGGTTTTACCAGTCAATGTT 159114 Query 152088 TTCACGAAGACCTGCAT 152104 || ||||| | ||||| Sbjct 159115 TTGACGAAAATTTGCAT 159131 Score = 86.0 bits (94), Expect = 1e-11 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||| | || ||||| || || || |||||||||| || || | || ||| Sbjct 159148 AGGACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGTCCGTCT 159207 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | ||| || || ||||| | | || || || | | |||||||||||| ||| Sbjct 159208 TCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCT 159267 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||||||| ||||| |||| | |||| ||| ||| ||||| | || || || Sbjct 159268 TGAATTTTAGCCTTGACGTTCTCAATTGTGTCGGAAGGCTCGACTTCTAAGGTGATGGTC 159327 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || | || || ||||| | ||||| Sbjct 159328 TTGCCAGTCAATGTTTTGACGAAAATTTGCAT 159359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153785393927045