Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq383 129 5e-25 seq451 120 3e-22 seq161 118 9e-22 seq565 107 2e-18 >seq383 Length=330124 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| ||||| ||||| || |||||||| || | ||| |||||| Sbjct 43724 ATGCAGATCTTTGTAAAAACTTTGACAGGTAAAACCATCACTTTAGAAGTAGAACCCTCG 43783 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || ||| | || ||| ||||||| |||||||||||| |||| |||||| Sbjct 43784 GATACTATTGAGAACGTTAAAGCAAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCAA 43843 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || | | |||| ||| || || || |||||||| || || | || |||||| Sbjct 43844 CAGCGCTTAATTTTTGCCGGTAAGCAGCTGGAAGATGGCCGCACCTTGTCAGACTATAAT 43903 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 || ||||| |||||||| || ||||| ||||| ||||| ||||| |||| Sbjct 43904 ATCCAAAAGGAATCTACGCTCCATTTGGTGTTACGTCTTCGCGGAGGCA 43952 >seq451 Length=246926 Score = 120 bits (132), Expect = 3e-22 Identities = 173/243 (71%), Gaps = 1/243 (0%) Strand=Plus/Minus Query 111097 AAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111156 || ||||| |||||||| ||||| | || ||||| ||||| || | || |||||| Sbjct 37998 AATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCC 37939 Query 111157 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111216 || || | | | |||||| || ||| |||||||| || |||| ||| Sbjct 37938 TCGGACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGAC 37879 Query 111217 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111276 || ||| | | |||| || || || |||||||||||| | || || |||||||| Sbjct 37878 CAGCAACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGTCGCACATTGTCCGATTAT 37819 Query 111277 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCAATAAATAA 111336 ||||| ||||||||||| ||| ||||| | ||||||||| |||| ||||| | ||| || Sbjct 37818 AATATTCAAAAAGAATCCACATTACATCTTGTGTTGCGTTTGCGAGGTGG-AGCAAAAAA 37760 Query 111337 ACG 111339 ||| Sbjct 37759 ACG 37757 >seq161 Length=579164 Score = 118 bits (130), Expect = 9e-22 Identities = 175/247 (71%), Gaps = 1/247 (0%) Strand=Plus/Minus Query 111080 TCATTTATAAGAGTTTAAAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTA 111139 |||||| || || | ||||||||||||||||||| ||||| | || |||||||| |||| Sbjct 362469 TCATTTTTA-GAATATAAAAATGCAAATTTTTGTTAAAACTCTTACTGGCAAAACTATTA 362411 Query 111140 CCGTGGAAACGGAACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAG 111199 | ||||| || || ||| || ||| | || || |||||| || |||| Sbjct 362410 CTTTGGAAGTTGAGCCTTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAG 362351 Query 111200 AAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTA 111259 ||||| |||| ||||||||| | | |||| || || ||||||||||||||| Sbjct 362350 AAGGCATTCCTCCAGATCAACAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGGC 362291 Query 111260 AAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGC 111319 ||| | | |||||||| |||||||| || || || | || || || | ||||| | Sbjct 362290 GGACTTTATCGGATTATAACATACAAAAGGAGTCGACCTTGCACTTGGTACTCCGTCTCC 362231 Query 111320 GCGGTGG 111326 | ||||| Sbjct 362230 GTGGTGG 362224 >seq565 Length=193464 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||| |||||||| ||||| || |||||||| || | ||| || || | Sbjct 159131 ATGCAAATTTTCGTCAAAACATTGACTGGTAAAACCATCACTTTAGAAGTCGAGCCTTCC 159072 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | || || |||||| || || ||||| | ||| |||||| Sbjct 159071 GATACCATTGAGAATGTCAAGGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAA 159012 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | | || | ||| ||||||||||||||||| || || ||||||| ||| Sbjct 159011 CAACGTTTGATCTTTGCTGGCAAACAATTGGAAGACGGACGCACCTTGTCCGATTACAAT 158952 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 || || || || || || | ||||| || | |||||||||||||||| Sbjct 158951 ATTCAGAAGGAGTCAACCTTGCATTTGGTTCTACGTCTGCGCGGTGGCA 158903 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||| |||||||| ||||| ||||| ||||| ||| | ||| || || | Sbjct 159359 ATGCAAATTTTCGTCAAAACATTGACTGGCAAGACCATCACCTTAGAAGTCGAGCCTTCC 159300 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | || || |||||| || || ||||| | ||| |||||| Sbjct 159299 GACACAATTGAGAACGTCAAGGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAA 159240 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | | || | ||| ||||||||||||||||| || || ||||||| ||| Sbjct 159239 CAACGTTTGATCTTTGCTGGCAAACAATTGGAAGACGGACGCACCTTGTCCGATTACAAT 159180 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 || || || || || || | ||||| || | |||||||||||||||| Sbjct 159179 ATTCAGAAGGAGTCAACCTTGCATTTGGTCCTACGTCTGCGCGGTGGCA 159131 Score = 102 bits (112), Expect = 7e-17 Identities = 168/241 (70%), Gaps = 1/241 (0%) Strand=Plus/Minus Query 111089 AGAGTTTAAAAA-TGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAA 111147 ||| |||||||| ||||||| || || ||||| || || |||||||| || || ||||| Sbjct 159599 AGATTTTAAAAAATGCAAATCTTCGTAAAAACATTAACTGGCAAAACTATCACTTTGGAA 159540 Query 111148 ACGGAACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTT 111207 ||||| ||| || | | | || ||| || ||| ||||| ||||| || Sbjct 159539 GTTGAACCGTCAGATACTATCGAAAATGTTAAAGCCAAGATTCAAGACAAGGAAGGTATT 159480 Query 111208 CCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATG 111267 || || || ||| | | |||| ||| ||||| ||| ||||||| || || Sbjct 159479 CCTCCAGACCAGCAACGTTTGATTTTTGCCGGCAAGCAACTGGAAGACGGACGCACCTTG 159420 Query 111268 GCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111327 ||||||||||||| || || || || || | ||||| || | ||||||||||||||| Sbjct 159419 TCCGATTATAATATTCAGAAGGAGTCAACCTTGCATTTGGTCCTACGTCTGCGCGGTGGC 159360 Query 111328 A 111328 | Sbjct 159359 A 159359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421798887726520