Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq35 132 6e-26 >seq35 Length=1460975 Score = 132 bits (146), Expect = 6e-26 Identities = 214/304 (70%), Gaps = 8/304 (3%) Strand=Plus/Plus Query 156164 AAACAATCGTCTGACGTTAGCTTCCGATTCACCCACATATTTGTTTAATAATTCAGGACC 156223 |||||| ||||| | |||||||| || || || |||||||| | ||||| || ||||| Sbjct 1137768 AAACAACCGTCTTATATTAGCTTCGGACTCGCCGACATATTTATCTAATACTTGCGGACC 1137827 Query 156224 GTTAACTATTTTGACGGGTCGTG---ATTTAAAAGCTTGAGCGATACAGCGAGCCATTAA 156280 || || ||||| ||| || | ||| || | ||| | || |||||||||||| Sbjct 1137828 ATTTACAATTTT--CGGCTCACGGGCATTCAACATATTGC-CTATTTGGCGAGCCATTAA 1137884 Query 156281 TGTTTTACCGCACCCAGGAGGTCCGTATAACAATACTCCTTTTATATGTTTACAACCTAA 156340 ||||| ||| ||||||||||| || ||||| | ||||| | |||||| ||||| | Sbjct 1137885 GGTTTTGCCGGTACCAGGAGGTCCATACAACAAAATACCTTTGACATGTTTGCAACCCAG 1137944 Query 156341 TTTTTCAGTTATTTCTACCGGAACTGATCTGGAAGCAAATGCTCTTCGAAAAATGAGAGA 156400 | |||| | ||| |||| ||| || ||||| || | || ||||| | Sbjct 1137945 CTGTTCAACCACTTCGGGAGGAAAGACTCTTGAGGCAAAAGCACGACGGAAAATAGCATT 1138004 Query 156401 AAATTCTTTATCCAATCCCCCCACACCCATTTCCTCAAAATTCCAAT--TTATAGATATT 156458 |||||||||||||| || || | |||||||| |||||| ||||| || |||| | Sbjct 1138005 GAATTCTTTATCCAAGCCGCCGATACCCATTTTGCCAAAATCCCAATCAGGATTGATAAT 1138064 Query 156459 TGAC 156462 |||| Sbjct 1138065 TGAC 1138068 Score = 107 bits (118), Expect = 3e-18 Identities = 223/331 (67%), Gaps = 6/331 (2%) Strand=Plus/Plus Query 155728 ATCGACTCAACGCCGTCGATTGAGCGGCGCGTACCAACCCTTCCAATTCAGCGCCGCTGT 155787 ||| | ||| || || ||||| || || ||||| || ||||||||||||||||||||| Sbjct 1137264 ATCTATTCATAGCAGTAGATTGGGCAGCACGTACTAAGCCTTCCAATTCAGCGCCGCTGA 1137323 Query 155788 AATTTTTAGTTTCAACGGCTATTTTATTTAAGTCTACGTCGGAAGCTAATATGTTGTGAG 155847 ||||||| || | || |||| || || || || ||| | | | || | Sbjct 1137324 AATTTTTGGTAAGGGCAGCGATTTCTTTCGTATCCACATCTCCAGCAATTTTATTAAAAT 1137383 Query 155848 ATTTCAT---TTTAGCAACGTGCACCTTTAAAATTTGAAGACGCCCCTTTTCATCGGGTA 155904 ||| ||| | ||| | |||| |||||| | | || ||| | || | Sbjct 1137384 CGCGCATACGTTTCGT---GTGAATATTTAGAATTTGTACTCTTCCAACTTCGTTAGGCA 1137440 Query 155905 ATCCAATTTCTATCTTCAATTCCAACCGCCCAGGTCTTAATAATGCTTCGTCAATTAAGT 155964 | | ||||| || | || |||||| || ||||| | || ||| || || ||||| | || Sbjct 1137441 AACTGATTTCCATTTGCACTTCCAAACGGCCAGGGCGTAGTAAAGCCTCATCAATCATGT 1137500 Query 155965 CGGGTCTGTTGGTCATACCTATGATTAAAATGTTGTTTAAAGATTCTACACCGTCTATTT 156024 | | | ||||||||||| || | |||||| || || || || || ||||| |||| Sbjct 1137501 CACGGCGATTGGTCATACCAATAACTAAAATATTATTCAATTGCTCCACTCCGTCGATTT 1137560 Query 156025 TAGACAATAATTGATTGACTACGGCGTCGTG 156055 ||| ||| |||||||| ||||| | ||| || Sbjct 1137561 TAGCCAACAATTGATTAACTACAGTGTCATG 1137591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667055229436200