Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq451 163 7e-35 seq565 129 1e-24 seq383 129 1e-24 >seq451 Length=246926 Score = 163 bits (180), Expect = 7e-35 Identities = 162/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || ||||| || || || || || ||||| || ||||| ||| ||| ||| Sbjct 37992 CAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCCTCGGAC 37933 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || ||| ||||||||||||||||| ||||| || || ||||||||| Sbjct 37932 ACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGACCAGCAA 37873 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | || ||||| ||||| || | |||||||| | || | |||||||||| | Sbjct 37872 CGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGTCGCACATTGTCCGATTATAATATT 37813 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||||||||||| ||| | |||||||| ||| Sbjct 37812 CAAAAAGAATCCACATTACATCTTGTGTTG 37783 >seq565 Length=193464 Score = 129 bits (142), Expect = 1e-24 Identities = 157/211 (74%), Gaps = 5/211 (2%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||| ||||| ||||| | || || ||||| ||||| | || || ||| Sbjct 159590 AAAATGC---AAATCTTCGTAAAAACATTAACTGGCAAAACTATCACTTTGGAAGTTGAA 159534 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||||| || ||||| || || ||| |||||||| ||||| ||||| || ||||| Sbjct 159533 CCGTCAGATACTATCGAAAATGTTAAAGCCAAGATTCAAGACAAGGAAGGTATTCCTCCA 159474 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGA 178093 ||||||||||| | || || ||||| || || || ||||| ||| | || |||| |||| Sbjct 159473 GACCAGCAACGTTTGATTTTTGCCGGCAAGCAACTGGAAGACGGACGCAC-CTTGTCCGA 159415 Query 178094 TTATAACGTCCAAAAAGAATCAACACTGCAT 178124 |||||| | || || || ||||| ||||| Sbjct 159414 TTATAATATTCAGAAGGAGTCAACCTTGCAT 159384 Score = 114 bits (126), Expect = 3e-20 Identities = 148/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| | || || || || |||||| | || || || || ||| Sbjct 159356 CAAATTTTCGTCAAAACATTGACTGGCAAGACCATCACCTTAGAAGTCGAGCCTTCCGAC 159297 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||||||||| || ||||| || || ||||||||||| || || || ||| Sbjct 159296 ACAATTGAGAACGTCAAGGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAACAA 159237 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | ||||| || || ||||| | ||||| ||| | || |||| ||||||| || | Sbjct 159236 CGTTTGATCTTTGCTGGCAAACAATTGGAAGACGGACGCAC-CTTGTCCGATTACAATAT 159178 Query 178103 CCAAAAAGAATCAACACTGCAT 178124 || || || ||||| ||||| Sbjct 159177 TCAGAAGGAGTCAACCTTGCAT 159156 Score = 111 bits (122), Expect = 4e-19 Identities = 151/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| | || || ||||| ||||| | || || || || || Sbjct 159128 CAAATTTTCGTCAAAACATTGACTGGTAAAACCATCACTTTAGAAGTCGAGCCTTCCGAT 159069 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| ||||| || ||||| || || ||||||||||| || || || ||| Sbjct 159068 ACCATTGAGAATGTCAAGGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAACAA 159009 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | ||||| || || ||||| | ||||| ||| | || |||| ||||||| || | Sbjct 159008 CGTTTGATCTTTGCTGGCAAACAATTGGAAGACGGACGCAC-CTTGTCCGATTACAATAT 158950 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTT 178130 || || || ||||| ||||| | ||| Sbjct 158949 TCAGAAGGAGTCAACCTTGCATTTGGTT 158922 >seq383 Length=330124 Score = 129 bits (142), Expect = 1e-24 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || |||||| | ||||| ||||| ||||| | || || ||| ||| || Sbjct 43727 CAGATCTTTGTAAAAACTTTGACAGGTAAAACCATCACTTTAGAAGTAGAACCCTCGGAT 43786 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| ||| ||| ||||| ||||||||||| || ||||| || || || Sbjct 43787 ACTATTGAGAACGTTAAAGCAAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCAACAG 43846 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | || || ||||| || ||||| |||||||| | || |||| | || ||||| | Sbjct 43847 CGCTTAATTTTTGCCGGTAAGCAGCTGGAAGATGGCCGCAC-CTTGTCAGACTATAATAT 43905 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTT 178132 |||||| ||||| || || ||| | || || Sbjct 43906 CCAAAAGGAATCTACGCTCCATTTGGTGTT 43935 Score = 116 bits (128), Expect = 9e-21 Identities = 152/210 (72%), Gaps = 3/210 (1%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || |||||||| || | || || ||||| ||||| | ||||| || Sbjct 43493 AAAATGC---AGATCTTCGTGAAGACATTGACTGGCAAAACTATCACTTTAGAGGTTGAG 43549 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || ||||| || ||||| || ||| || ||||| || || ||||||||||| || Sbjct 43550 CCGTCTGACACTATTGAGAATGTTAAAGCTAAAATTCAAGATAAGGAAGGAATCCCGCCA 43609 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || ||||| || | || || || ||||| || | || ||||| | |||||| | ||| Sbjct 43610 GATCAGCAGCGTTTAATTTTTGCTGGAAAGCAATTGGAGGATGGCCGTACTCTTTCGGAT 43669 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCAT 178124 |||||| | || ||||| ||||| ||||| Sbjct 43670 TATAACATACAGAAAGAGTCAACTTTGCAT 43699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203694262379630