Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq383 129 5e-25 seq565 114 1e-20 seq451 86.0 6e-12 >seq383 Length=330124 Score = 129 bits (142), Expect = 5e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||||||||||| ||| ||||| ||||| || || |||||||| || Sbjct 43951 GCCTCCGCGAAGACGTAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGA 43892 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | |||||| | || || |||||||| ||||| || || | ||||||||| || | || Sbjct 43891 CAAGGTGCGGCCATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGG 43832 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCA 41813 || || || |||| | ||| ||||||||| |||| | | ||| || | || | Sbjct 43831 AATGCCTTCTTTGT-CTTGAATTTTTGCTTTAACGTTCTCAATAGTATCCGAGGGTTCTA 43773 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || | || || |||||||| |||| || ||||| || ||||||||| Sbjct 43772 CTTCTAAAGTGATGGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCATG 43723 >seq565 Length=193464 Score = 114 bits (126), Expect = 1e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||||| |||| ||||| || |||||||||||| ||||| ||||| Sbjct 159360 GCCACCGCGCAGACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTATAATCGGA 159419 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | |||||| |||| || || ||||||||||| || |||| || || ||||| | || Sbjct 159420 CAAGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGGTCTGGAGG 159479 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || | ||||||| | ||| | || |||| ||| | | ||| || || || | Sbjct 159480 AATACCTTCCTTGT-CTTGAATCTTGGCTTTAACATTTTCGATAGTATCTGACGGTTCAA 159538 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 | |||| || || ||||| || || | || |||||||| || ||||| || Sbjct 159539 CTTCCAAAGTGATAGTTTTGCCAGTTAATGTTTTTACGAAGATTTGCATTTT 159590 Score = 102 bits (112), Expect = 8e-17 Identities = 164/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || | |||||| |||| ||| || || || ||||||||||| ||||| || Sbjct 150863 GCCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCAGA 150922 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| ||||| | | || | ||| ||||| || || |||| || ||||| || | || Sbjct 150923 GAGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGG 150982 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCA 41813 || | ||| || | | ||| |||| | || ||| | | ||| ||| | ||| | Sbjct 150983 GACACCCTCTTTAT-CTTGAATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAA 151041 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTA 41866 |||||| || || ||||| || |||| ||||| ||||| |||||||| ||| Sbjct 151042 CCTCCAAGGTGATAGTTTTTCCAGTCAATGTCTTCACGAAGATCTGCATTTTA 151094 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| || |||| ||||| ||| || ||||| ||||| || || || Sbjct 150636 CCACCGCGGAGACGCAATACCAAATGCAATGTGGATTCTTTCTGTATGTTGTAATCAGAC 150695 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| |||| || | ||| || || || || |||| ||||||||||| | ||| Sbjct 150696 AACGTGCGGCCGTCTTCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAGGA 150755 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||| | || ||||||||| |||| | | ||| || ||| || || Sbjct 150756 ATACCTTCCTTGT-CTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGACGATTCTAC 150814 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| || || ||||| || |||| || || || || || |||||| Sbjct 150815 TTCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCATG 150863 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||||| |||| ||||| || |||||||||||| || || ||||| Sbjct 158904 GCCACCGCGCAGACGTAGAACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGGA 158963 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | |||||| |||| || | || ||||| || || |||| || ||||| || | ||| Sbjct 158964 CAAGGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGG 159023 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCA 41813 | | ||||| | | ||| |||| | ||| | | | || ||| | ||| | Sbjct 159024 GATTCCTTCCTTAT-CTTGAATTTTAGCCTTGACATTCTCAATGGTATCGGAAGGCTCGA 159082 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || | || || |||||||| |||| || || |||||||| |||||| Sbjct 159083 CTTCTAAAGTGATGGTTTTACCAGTCAATGTTTTGACGAAAATTTGCATG 159132 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||||| |||| ||||| || |||||||||||| || || ||||| Sbjct 159132 GCCACCGCGCAGACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGGA 159191 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | |||||| |||| || | || ||||| || || |||| || ||||| || | ||| Sbjct 159192 CAAGGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGG 159251 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCA 41813 | | ||||| | | ||| |||| || | ||| | | |||||| | ||| | Sbjct 159252 GATTCCTTCCTTAT-CTTGAATTTTAGCCTTGACGTTCTCAATTGTGTCGGAAGGCTCGA 159310 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || | || || || || || |||| || || |||||||| |||||| Sbjct 159311 CTTCTAAGGTGATGGTCTTGCCAGTCAATGTTTTGACGAAAATTTGCATG 159360 >seq451 Length=246926 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || | ||| ||||| ||||| | ||| || || ||||| ||||| ||||| Sbjct 37769 CCACCTCGCAAACGCAACACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGGAC 37828 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| | || || | ||||| || ||||| |||| || || ||||| | ||| Sbjct 37829 AATGTGCGACCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 37888 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||| |||||| ||| | || |||| || | | |||||| | || || Sbjct 37889 ATTCCCTCTTTGTCC-TGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGAC 37947 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | || || || || ||||| || || ||||| ||||||||||| || Sbjct 37948 CTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 37998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462290159774000