Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq9454 208 8e-49 seq20437 91.5 2e-13 >seq9454 Length=16677 Score = 208 bits (230), Expect = 8e-49 Identities = 430/622 (69%), Gaps = 16/622 (3%) Strand=Plus/Minus Query 16798 ATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTAT-AAGACGTA 16856 ||| || ||| |||||||||||| ||||| ||| | |||||| || || ||| || | Sbjct 13705 ATCGGCAACATATTCTATATATTTACACATACTTTCACTGTTCATGCCAATTAAGTCG-A 13647 Query 16857 CCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCC-TTAATAATACTA 16915 | || | ||||| |||||||| || || || || || || ||| || | | | Sbjct 13646 CTGGTAAGGCTTCTGTCAAAAACTCTTTTTCAATTTTTACGGCATCAGTTATTATTTCCA 13587 Query 16916 GCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCG 16975 | | ||||| | |||| | ||| | | |||||||||||| || || || || Sbjct 13586 AAATC-CGTTCTTTACTCGGTTTTTGTATTAAATGTTTAAACATTAGTACCGCAAATTCA 13528 Query 16976 CAATGTAATCCCTCGTCTC-TGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTT 17034 || || || || || || | || | || | ||| ||||| ||||| || || ||||| | Sbjct 13527 CAGTGCAAGCCTTCATCACGTGAT-ATCATTTCATTAGAGAATGTTAAACCTGGCATTAT 13469 Query 17035 TCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGAC 17094 ||| |||||||||| ||||||||||| ||||| ||| |||||| ||||| ||||| Sbjct 13468 TCCACGTTTCTTTAGCCAAAATATCGAAGCGAAGCTGCCACTAAAGAAAATACCTTCGAC 13409 Query 17095 GGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGA-ATCCATTTCT 17153 | || || || || | || ||| | | | || | | | || |||||| Sbjct 13408 AGCAGCGAAAGCTATGATACGCTCGCCAAAATTAGCCGAAT-GCGATGATATCCATGCTA 13350 Query 17154 GCACCCACTCGGCTTTTTGCTTTATGCAATC-CATCGTTTCTATGGCCTTAAATA-AT-T 17210 | |||| ||||| || | ||| | |||| ||| || || ||||| ||||| | || | Sbjct 13349 GAGCCCATTCGGCCTTCTTCTTAAC-CAATGGCATTGTCTCAATGGCATTAAAGAGATAT 13291 Query 17211 TCTCTTT-TTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAG 17269 || | || || || || || ||||| || ||||| ||||| || |||||||| || Sbjct 13290 TCACGTTCTTTCTCA---TCCATGATATATGTTTCGATAAGTAGACTATACATTTCCGAA 13234 Query 17270 TGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACT 17329 || | || |||||||| || ||||| ||||||||||| || ||||| | ||||||||| Sbjct 13233 TGCACATTTTCCATGGCAATTTGAAAACCGTAAAAGCAACGAGCTTCAGTTATTTGAACC 13174 Query 17330 TCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAAC 17389 || | | ||||||||| ||| ||| || || || || || ||| || || ||||| Sbjct 13173 TCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGGATGCCGCAAAAAAA 13114 Query 17390 GCCAATATATGCTTAATGAAAT 17411 ||||| | ||| ||| |||| Sbjct 13113 GCCAAAACATGTGAAATAAAAT 13092 >seq20437 Length=48329 Score = 91.5 bits (100), Expect = 2e-13 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 119861 CCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTTATCGTTTAAGTAGATACAG 119920 || || || || ||||||||||||||||| || |||| |||| ||||| || || | Sbjct 15776 CCGACATAACCATTGGGATCCGTTCCATCCAAACTGTATCTATCATTTAAA-AG-TAGCG 15833 Query 119921 ACGCTT--AACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAtttttttAGCCCAGTACA 119978 | || || || |||||| | | |||||| | || ||||||||||| |||| Sbjct 15834 AAAATTCCAAAGCGTCTTCAGGGCTTTTAGACCATTCTAAAATCTTTTTAGCCCAATACA 15893 Query 119979 TACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAGTTGTGCGGCGTTCCATA 120038 | || || | || ||||||||||| || || | || ||| ||||| || | ||||| | Sbjct 15894 TGCGCAAAAAGCCGTGCATTTTACCCTCTCGCATCAATTGCAGTTGAGCTGAATTCCACA 15953 Query 120039 AGGGATCGTGTGTACGGGCGTGTTCTAA 120066 | |||||| ||||| || || || || Sbjct 15954 AATCATCGTGGGTACGAGCCTGCTCGAA 15981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517389876998280