Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq9454 203 3e-47 seq20437 86.0 6e-12 >seq9454 Length=16677 Score = 203 bits (224), Expect = 3e-47 Identities = 417/607 (69%), Gaps = 20/607 (3%) Strand=Plus/Minus Query 16036 ATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTAT-AAGTCGTA 16094 ||| || ||| |||||||||||| |||||| || | || || || || |||||| | Sbjct 13705 ATCGGCAACATATTCTATATATTTACACATACTTTCACTGTTCATGCCAATTAAGTCG-A 13647 Query 16095 CCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGG 16154 | || | |||| ||| ||||| | || ||| || || || || | || || || Sbjct 13646 CTGGTAAGGCTTCTGTCAAAAACTCTTTTTCAATTTTTACGGCATCAGTTATTATTTCCA 13587 Query 16155 TGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGC 16214 ||| || | |||| | || ||| |||||||||||||| ||| || || | Sbjct 13586 AAATCCGTTCTTTACTCGGTTTTTGTATTAAATGTTTAAACATTAGTACCGCAAATTCAC 13527 Query 16215 AATGTAGTCCTTCGTCTC-TGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTT 16273 | || | ||||| || | || | || | ||| || || || ||||| ||||||||| || Sbjct 13526 AGTGCAAGCCTTCATCACGTGAT-ATCATTTCATTAGAGAATGTTAAACCTGGCATTATT 13468 Query 16274 CCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACA 16333 || |||||||||| ||| ||||||| ||| || || |||||| ||||| || ||| Sbjct 13467 CCACGTTTCTTTAGCCAAAATATCGAAGCGAAGCTGCCACTAAAGAAAATACCTTCGACA 13408 Query 16334 GATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGA----ATCCATTT 16389 | || ||||| || | || || | | |||| | | ||| |||||| Sbjct 13407 GCAGCGAAAGCTATGATACGCTCGCCAAAATTAGCCG----AATGCGATGATATCCATGC 13352 Query 16390 CTGTACCCATTCGGCTTTTTGTTTTATACAATC-CATCGTTTCTATGGCCTTAAACA-AT 16447 | |||||||||| || | | ||| |||| ||| || || ||||| ||||| | || Sbjct 13351 TAGAGCCCATTCGGCCTTCT-TCTTAACCAATGGCATTGTCTCAATGGCATTAAAGAGAT 13293 Query 16448 -TTCTCTTT-TTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTG 16505 ||| | || || || | || || ||||| || || || |||| ||| |||||||| | Sbjct 13292 ATTCACGTTCTTTCTCA---TCCATGATATATGTTTCGATAAGTAGACTATACATTTCCG 13236 Query 16506 AGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTA 16565 | || | || || ||||| || ||||| || || ||||| ||||| || | |||||| | Sbjct 13235 AATGCACATTTTCCATGGCAATTTGAAAACCGTAAAAGCAACGAGCTTCAGTTATTTGAA 13176 Query 16566 CTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAA 16625 | || | ||||||||||| | | |||||||| || ||||| || ||| ||||||| Sbjct 13175 CCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGGATGCCGCAAAAA 13116 Query 16626 ACGCCAA 16632 | ||||| Sbjct 13115 AAGCCAA 13109 >seq20437 Length=48329 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 119014 CCCACGTATCCGTTGGGATCTGTTCCGTCTAACTCGTACTTATCGTTTAAGTAGATACAG 119073 || || || || |||||||| ||||| || || ||| |||| ||||| || || | Sbjct 15776 CCGACATAACCATTGGGATCCGTTCCATCCAAACTGTATCTATCATTTAAA-AG-TAGCG 15833 Query 119074 ACGCTT--AACGCACTTTCCGGAGTCTTACTCCATTCCAGTAtttttttAGCCCAGTACA 119131 | || || || ||| || | ||| |||||| | || ||||||||||| |||| Sbjct 15834 AAAATTCCAAAGCGTCTTCAGGGCTTTTAGACCATTCTAAAATCTTTTTAGCCCAATACA 15893 Query 119132 TACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTGAAGTTGTGCGGTGTTCCATA 119191 | || ||| | ||||||||||||||||| |||| || ||||| || | ||||| | Sbjct 15894 TGCGCAAAAAGCCGTGCATTTTACCCTCTCGCATCAATTGCAGTTGAGCTGAATTCCACA 15953 Query 119192 GAGGATCGTGTGTACGGGCGTGTTCTAA 119219 | |||||| ||||| || || || || Sbjct 15954 AATCATCGTGGGTACGAGCCTGCTCGAA 15981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511260521799720