Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_001901.1 Length=46375 Score E Sequences producing significant alignments: (Bits) Value seq4703 412 1e-110 >seq4703 Length=1862 Score = 412 bits (456), Expect = 1e-110 Identities = 767/1121 (68%), Gaps = 4/1121 (0%) Strand=Plus/Plus Query 23158 CTCCCAACGAGGTTTGATTAGATCTTCGAAAATTTCTTTGCAGACTGGCTCCCAGATTTC 23217 |||||| || ||||| || ||| ||||||||||| |||||||| || ||||| || Sbjct 107 CTCCCAGCGTGGTTTAATCAGACGATCGAAAATTTCATTGCAGACAGGTTCCCAAATAGA 166 Query 23218 CACTGCATTTCGCCAGGCATTAAGCGTTGAGCGTTGATTTGCTGCTTGCTCAAATACGGT 23277 | ||||||| ||||||| | | |||||||||| || || ||||| || || Sbjct 167 AAGAGCATTTCTCCAGGCACCAGTTGAAGAGCGTTGATCAATGGCCTGTTCAAAAACAGT 226 Query 23278 GCGCATCTTGATCTGGCCTTTACCAACTTCATCAGTGACCCGCACGACCTGTCGCAAGAC 23337 | |||| |||||| ||||||||||||||||| || | || || || | | | || Sbjct 227 TCTCATCCGGATCTGACCTTTACCAACTTCATCCGTTTCACGTACAACATTTTTTAGAAC 286 Query 23338 CATAGCTCCCCAGGTATTTCGAATCTGCTCCTCCATCCACCGGGACTGATTGCCGTTAGT 23397 ||| |||||||| || ||||| ||||||||||||||| |||||||| ||| ||| | Sbjct 287 CATGCTTCCCCAGGCATCCCGAATTTGCTCCTCCATCCACGGGGACTGAGAGCCATTACT 346 Query 23398 AAGGCTGTATTTGGTCAGGAGCAGGCGGACGACAGGTTCAAAGCCGCCCAAATCGACGGT 23457 | |||||||||||| || | | || || |||| || || || | ||| ||| | Sbjct 347 ATTGCTGTATTTGGTAAGCAAAATACGTACATCAGGCTCGAACCCTTTAAGATCAACGTT 406 Query 23458 TTCAAGCAGGTCGAGCAGCATGGTGAAAAACTGAAGAACTGATGCATAGTCGAACAGCTC 23517 | ||||| || | ||||| ||||||||| || | || | ||||| |||| ||| Sbjct 407 CTTGAGCAGATCACGAAGCATATCGAAAAACTGCAGTGCGGAGGTGTAGTCAAACAACTC 466 Query 23518 TGCAGGGGTTGCTACCACGATGACGTCAGCAGCACAGACAACGTTAATAGTTCCCGTACC 23577 ||||| || | || | | || ||||||||||| || || ||||| || || |||| Sbjct 467 AGCAGGCGTGGGAACAATCAGCACATCAGCAGCACATACGACATTAATCGTGCCGATACC 526 Query 23578 CAAGTTTGGCGCGCTGTCTATGACGATAATGTCGTAGTTATCCCATACAGACTCGATAGC 23637 || ||| ||||||||||| || || || | || |||| || |||| || || || Sbjct 527 CAGGTTAGGCGCGCTGTCAATAACTATGACATCATAGTCATGAGCAACAGTTTCAATGGC 586 Query 23638 AGCACGAAGCATCAGATGAGG-GGGATGAGGTAGCTTCCCCTCGGAATGGTACTGCATCA 23696 || |||||||| || || | || || || || || || | | ||| | Sbjct 587 CAGTCGGAGCATCAGGTGTGGATCGGTG-GGCAGTTTACCTTCATCAAATTTGCCCATTA 645 Query 23697 GATCTGTTTCAATGCGGTGAAGGGCCAGGCAGCTGGGGATTATGTCGAGACCCGGCCAGC 23756 || |||||||| ||||| || ||||| ||| || || ||||| || |||||||||| Sbjct 646 ACTCAGTTTCAATACGGTGCAGAGCCAGACAGGAAGGAATAATGTCAAGCCCCGGCCAGC 705 Query 23757 ATGTTGGTTTTATCGCATATTCAGCGTTGTCGCGTTTACCC-AGGTAAAATGGAAGCAGT 23815 | || || ||||| ||||| | | ||| | ||| ||| || || || || || || Sbjct 706 AAGTGGGCTTTATTGCATAAGTGACATCGTC-CTTTTCCCCAAGATAGAAAGGCAGGAGA 764 Query 23816 GTATCGTCTGCGTGAATGTGCAAATCAGGAACGTAACCGTGGTACATAGATGCAGTCCCT 23875 || || ||||| ||||| || | ||| || || | ||||| ||||| || || || || Sbjct 765 GTGTCTTCTGCATGAATATGAAGATCTGGTACCCATCCGTGATACATTGAGGCTGTTCCC 824 Query 23876 TGCGGGTCGTTCCCTTCAACGAGTAGGACGCGGTGCCCTTGCAAGGCTAACCATTGCGCC 23935 || |||||||| ||||| ||||| | || || |||| | || || | || || Sbjct 825 TGGGGGTCGTTACCTTCCACGAGCAAAACACGTAGCCCCTTCAGAGCCAGATCCTGAGCA 884 Query 23936 TGGTGTACTGCAGATGAGGTTTTATAAACCCCTCCCTTGTGTGACATAACGGAAAGTACA 23995 | || || | | ||||||||| ||||| || || || || | ||| | || Sbjct 885 AGATGAACAGAAACTGAGGTTTTGTAAACGCCACCTTTATGGGCAGCAACCCCGATCACC 944 Query 23996 ACCGGGTTTTTATCGTCAGGTCTTTGGTTTGGGTTACCAAACACACTCCGCATATGGCTA 24055 || | || |||| | | | | | ||||||||||| |||||||| || Sbjct 945 GGTGGAAATACGTCTTCAGCACGTCGCAATCGCGTACCAAACACATCACGCATATGATTA 1004 Query 24056 ATTTGGTCAATTGTGTAGCCAGCGCGACGTTCTACTCGGCCCCTCATCTCAAAATCAGGA 24115 ||||| |||||||| || ||| | || | || || || || | || || | ||| || Sbjct 1005 ATTTGTTCAATTGTATAACCAACACGTTGCTCAACCCGTCCTCGAATTTCCATATCCGGG 1064 Query 24116 GCCGGTAGACGACCAGCTTTTTCCGCGTCTCTGATAGCCTGCGGTGTTACGCCGATCAGG 24175 |||||| || || ||||| || || |||||||||||||| | | || || | | Sbjct 1065 TGCGGTAGTCGCCCTGCTTTCTCGGCATCTCTGATAGCCTGAGAAGAAACCCCAACTAAA 1124 Query 24176 TCTGCAACTTCTGTTATACCCCAGCGGCGAGTAATACGACGCGCTTCCGGGCTGTCATCG 24235 || || |||| ||| | |||||| || || || | |||||||||||||||||| Sbjct 1125 TCCGCTGCTTCACCTATTCTCCAGCGCCGGGTTATTTTCCTCGCTTCCGGGCTGTCATCA 1184 Query 24236 CCGAACTGTGCGATGGCAATAGCGCGCGTCATTTCCTGACC 24276 |||||||| ||||| ||||| ||||||||| ||||| Sbjct 1185 TTAAACTGTGCAATGGCGATAGCCTTCGTCATTTCATGACC 1225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148236015638774