Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq4550 105 5e-18 seq4549 96.9 3e-15 seq11312 89.7 4e-13 >seq4550 Length=29190 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||||||||| | ||||| ||||| || ||||| || || ||| |||||| | Sbjct 5743 AATGCAAATATTTGTTAAAACTTTGACTGGAAAAACGATCACTTTGGAAGTGGAACCGTC 5802 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | | | || |||||| || || |||||| | || ||| || Sbjct 5803 GGACACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCA 5862 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 || | | |||||||| |||||||| ||||||||| || || | |||||||| Sbjct 5863 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGGCGCACATTGTCGGATTACAA 5922 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || ||||||||||||||||||||| ||||||| || | || ||||| Sbjct 5923 CATACAAAAGGAATCTACTCTTCACTTGGTGTTGCGTCTCCGCGGAGG 5970 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 |||||||| || ||| | || |||||||| || ||||| || ||| || || || Sbjct 5057 AAAATGCAGATCTTCGTGAAGACATTGACTGGGAAAACTATCACCTTGGAGGTTGAGCCA 5116 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || || | | || | || |||||| ||||||||||| || || |||| Sbjct 5117 TCCGATACTATTGAGAATGTTAAAACTAAAATTCAAGATAAAGAAGGAGTCCCACCAGAT 5176 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 ||||| | | |||||||| |||||||| |||||| || | || | |||| ||| Sbjct 5177 CAACAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCTCCGACTAC 5236 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || ||||| || ||||| || || || |||| ||||| || || || || Sbjct 5237 AACATTCAGAAAGAATCGACACTCCATTTGGTTTTACGTTTGCGTGGTGG 5286 >seq4549 Length=20005 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 25031 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 25090 |||||||||||| || | |||||||| || |||||||| ||||| ||| ||||| Sbjct 19475 AAAAATGCAAATCTTTGTAAAAACATTAACTGGCAAAACTATTACTTTGGAAGTTGAACC 19534 Query 25091 CGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 25150 | || || | | || | ||| |||||| || || |||||| | ||| ||| Sbjct 19535 ATCGGATACTATCGAAAATGTTAAGGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGA 19594 Query 25151 TCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTA 25210 ||| ||| | | || ||||| ||||| ||||||||||| || || | ||||| Sbjct 19595 TCAGCAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCTTGTCTGATTA 19654 Query 25211 CAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||||||| ||||| || || | || |||| |||| |||| || || Sbjct 19655 CAATATTCAGAAGGAGTCGACATTGCATTTGGTCCTACGTCTACGCGGTGG 19705 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| ||||||||||||| ||||| ||||| ||| ||| || || | Sbjct 19707 ATGCAAATTTTCGTCAAAACATTGACTGGCAAGACCATCACCCTAGAAGTCGAGCCTTCC 19766 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | ||||| |||||| || || |||||| | ||| |||||| Sbjct 19767 GACACCATTGAAAACGTCAAGGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGATCAG 19826 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGA--TTCCAAAACTATGGCCGATTACA 25212 ||| | | || ||||| ||||| ||||||||||| | | |||| | ||||||| Sbjct 19827 CAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCCTAT--CTGATTACA 19884 Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 | ||||||||||| || || | || |||| |||| Sbjct 19885 ACATTCAAAAGGAGTCGACATTGCATTTGGTCCTACG 19921 >seq11312 Length=46762 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 25030 TAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAAC 25089 ||||||||||||| ||| | ||||| | || |||||||| ||||| ||| || | Sbjct 38151 TAAAAATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGC 38210 Query 25090 CCGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAG 25149 | | || || | | || ||||| |||||| ||||||||||| | || || Sbjct 38211 CTTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAG 38270 Query 25150 ATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATT 25209 |||||||| | | || || || ||||| |||||||||||| || | |||| | Sbjct 38271 ATCAACAACGTTTGATTTTCGCTGGCAAGCAATTGGAAGATGGACGCACGTTATCCGACT 38330 Query 25210 ACAATATTCAAAAGGAATCTACTCTTCACATGGT 25243 |||| || |||||||| || || | ||| |||| Sbjct 38331 ACAACATACAAAAGGAGTCGACCTTGCACTTGGT 38364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410676286468394