Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq9454 158 1e-33 seq11312 104 2e-17 seq23389 100 3e-16 seq4550 100 3e-16 seq4549 91.5 2e-13 >seq9454 Length=16677 Score = 158 bits (174), Expect = 1e-33 Identities = 363/541 (67%), Gaps = 18/541 (3%) Strand=Plus/Plus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714 |||| || || || || ||||| | || ||||| ||||| || || |||| | ||| | Sbjct 13005 AGGCGGAAGCCTCTTTTTGGACTGCTGAAGAGGTTGACCTCTCTAAAGACATGGACGATT 13064 Query 116715 GGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCG 116774 || | || || | ||| ||| || ||||| || || || |||| ||||| || | Sbjct 13065 GGAATCGGTTAAGTGACGGCGAACGGCATTTTATTTCACATGTTTTGGCTTTTTTTGCGG 13124 Query 116775 CCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGG 116834 | ||| || || || || |||||| | || || || || | || ||||| || | Sbjct 13125 CATCCGATGGTATTGTTAATGAGAATTTAGTGGAACGATTTTCCCAAGAGGTTCAAATAA 13184 Query 116835 CCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGT 116894 | || || || ||||| ||||| ||||| || |||||||| || ||||| |||||||||| Sbjct 13185 CTGAAGCTCGTTGCTTTTACGGTTTTCAAATTGCCATGGAAAATGTGCATTCGGAAATGT 13244 Query 116895 AT--TCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCG------TTT 116946 || || | || ||||| || || || | ||| ||||| || | | Sbjct 13245 ATAGTCTA--CTTATCGAAACATA-----TATCAT-GGATGAGAAAGAACGTGAATATCT 13296 Query 116947 GTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTG 117006 || || ||||| ||||| ||||| | || || |||||||||| ||||| || || Sbjct 13297 CTTTAATGCCATTGAGACAATGCCATTGGTTAAGAAGAAGGCCGAATGGGCTCTAGCATG 13356 Query 117007 GATCGC-CGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGG 117065 ||| | ||| ||| || |||||||| | | || ||||| || ||||| | Sbjct 13357 GATATCATCGCA-TTCGGCTAATTTTGGCGAGCGTATCATAGCTTTCGCTGCTGTCGAAG 13415 Query 117066 GCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGC 117125 | | |||||| ||||| ||||| | ||||||||||| |||||||| || | |||| Sbjct 13416 GTATTTTCTTTAGTGGCAGCTTCGCTTCGATATTTTGGCTAAAGAAACGTGGAATAATGC 13475 Query 117126 CCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTG 117185 | || | || ||| || || | || || | || || || |||| || || |||| Sbjct 13476 CAGGTTTAACATTCTCTAATGAAATGATATCACGTGATGAAGGCTTGCACTGTGAATTTG 13535 Query 117186 C 117186 | Sbjct 13536 C 13536 >seq11312 Length=46762 Score = 104 bits (114), Expect = 2e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 |||||||||||| ||||| ||||| || || |||||||| || || | || || || | Sbjct 38152 AAAAATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGCC 38211 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | ||| |||||| ||||||| || ||||| ||||| || | || Sbjct 38212 TTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAGA 38271 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 || ||||| | || | ||| ||||| || |||| || | ||||| | |||||| Sbjct 38272 TCAACAACGTTTGATTTTCGCTGGCAAGCAATTGGAAGATGGACGCACGTTATCCGACTA 38331 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCA 40892 |||||| || |||||| | || |||| Sbjct 38332 CAACATACAAAAGGAGTCGACCTTGCA 38358 >seq23389 Length=58516 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || |||||||| || |||||||| |||||||| | || |||||| || Sbjct 44631 AATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCC 44572 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | ||| | || | || |||| ||||||||||| || || | ||| Sbjct 44571 TCGGACACTATTGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGAC 44512 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| ||| | || | ||| || || || |||| || | ||||| | ||| || Sbjct 44511 CAGCAGCGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACATTGTCCGATTAT 44452 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || || || || || |||| | ||||| ||| |||| ||| | || || Sbjct 44451 AATATTCAAAAAGAATCCACCTTACATCTTGTGCTGCGTTTGCGAGGTGG 44402 >seq4550 Length=29190 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||||||||| || ||||| | || || ||||| || || | || || ||| | | Sbjct 5515 AATGCAAATATTTGTTAAAACTTTGACTGGGAAAACGATTACTTTGGAGGTGGAACCGTC 5574 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | ||||| | || | |||||| | ||||| || || || || | |||| Sbjct 5575 GGACACTATCGAAAACG-TTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACC 5633 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || | |||| || ||||||||| |||| || | |||||| | || |||| Sbjct 5634 AGCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGGCGCACATTGTCGGATTACA 5693 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||| || ||||| |||| ||||| | |||||||| Sbjct 5694 ACATACAAAAGGAATCCACATTGCATTTGGTGTTGCG 5730 Score = 96.9 bits (106), Expect = 4e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||||||||| || ||||| | || || ||||| ||||| | || || ||| | | Sbjct 5743 AATGCAAATATTTGTTAAAACTTTGACTGGAAAAACGATCACTTTGGAAGTGGAACCGTC 5802 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | ||||| | || | |||||| | ||||| || || || || | |||| Sbjct 5803 GGACACTATCGAAAACG-TTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACC 5861 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || | |||| || ||||||||| |||| || | |||||| | || |||| Sbjct 5862 AGCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGGCGCACATTGTCGGATTACA 5921 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||| || ||||| | || || || | |||||||| Sbjct 5922 ACATACAAAAGGAATCTACTCTTCACTTGGTGTTGCG 5958 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||||||||| || || || | || |||||||||||||| | || || ||| | | Sbjct 5288 ATGCAAATATTTGTTAAGACTTTGACCGGCAAAACCATCACTTTGGAGGTAGAATCATCG 5347 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | ||||| | || | |||||| | ||||| || || || || | ||||| Sbjct 5348 GATACTATCGAAAACG-TTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCA 5406 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| || || || ||| |||| || | |||||| | || ||||| Sbjct 5407 GCAGCGTTTGATCTTTGCTGGAAAGCAGTTGGAAGATGGGCGCACATTGTCGGATTACAA 5466 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||| || ||||| |||| ||||| | |||||||| Sbjct 5467 CATACAAAAGGAATCCACATTGCATTTGGTGTTGCG 5502 >seq4549 Length=20005 Score = 91.5 bits (100), Expect = 2e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 |||||||||||| || |||||||| | || |||||||| || || | || || ||| | Sbjct 19475 AAAAATGCAAATCTTTGTAAAAACATTAACTGGCAAAACTATTACTTTGGAAGTTGAACC 19534 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | || | | ||| | |||| ||||||| ||||| || || || ||| | || Sbjct 19535 ATCGGATACTATCGAAAATGTTAAGGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGA 19594 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||||| | || | || ||||| || |||| |||| |||||| | || || Sbjct 19595 TCAGCAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCTTGTCTGATTA 19654 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCAT 40893 ||| || ||||||||| | || ||||| Sbjct 19655 CAATATTCAGAAGGAGTCGACATTGCAT 19682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515064176982960