Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq4549 152 8e-32 seq4550 141 1e-28 seq4837 140 5e-28 seq23389 131 3e-25 seq11312 111 2e-19 seq181 98.7 1e-15 >seq4549 Length=20005 Score = 152 bits (168), Expect = 8e-32 Identities = 177/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| |||| ||| |||| ||||||||||| ||| | || ||||| || Sbjct 19478 AATGCAAATCTTTGTAAAAACATTAACTGGCAAAACTATTACTTTGGAAGTTGAACCATC 19537 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || ||| | || ||||||||||| || |||||||| || || ||||| Sbjct 19538 GGATACTATCGAAAATGTTAAGGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGATCA 19597 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | |||||||| || || ||||| || || | || || || ||||| || Sbjct 19598 GCAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCTTGTCTGATTACAA 19657 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||| || || || || ||||||||||| ||||| |||| |||||||| ||| || Sbjct 19658 TATTCAGAAGGAGTCGACATTGCATTTGGTCCTACGTCTACGCGGTGGTATGCAAATTT 19716 Score = 111 bits (122), Expect = 2e-19 Identities = 123/163 (75%), Gaps = 1/163 (1%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 ||||||||||| || |||||||| || || ||||| ||| | | |||||||| || || Sbjct 19791 AAAATTCAAGACAAGGAAGGTATTCCCCCAGATCAGCAACGTTTGATTTTTGCTGGCAAG 19850 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||||| || || | || || || ||||| || |||||||| || || || |||||| Sbjct 19851 CAATTGGAAGACGGACGCACCCTATCTGATTACAACATTCAAAAGGAGTCGACATTGCAT 19910 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATTCATAAAAA 124784 ||||| ||||| | || |||||||| ||| |||| | |||| Sbjct 19911 TTGGTCCTACGTCTGCGCGGTGGTATGCAAATATTCGTCAAAA 19953 >seq4550 Length=29190 Score = 141 bits (156), Expect = 1e-28 Identities = 174/235 (74%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 124535 TACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGC 124594 || |||||| || || | |||||| | || || |||||||| || | ||| |||| | Sbjct 5056 TAAAATGCAGATCTTCGTGAAGACATTGACTGGGAAAACTATCACCTTGGAGGTTGAGCC 5115 Query 124595 AAATGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTG 124653 | ||||| ||| ||| ||||||| |||||||||||||||||||| | ||||| | Sbjct 5116 ATCCGATACTATTGAGAATGTTAAAACT-AAAATTCAAGATAAAGAAGGAGTCCCACCAG 5174 Query 124654 ATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATT 124713 ||||||| | | || ||||| || ||||| || || || | || ||| | || | Sbjct 5175 ATCAACAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCTCCGACT 5234 Query 124714 ATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | || ||||| |||||||| || | ||||||||||||||||| || |||||||| Sbjct 5235 ACAACATTCAGAAAGAATCGACACTCCATTTGGTTTTACGTTTGCGTGGTGGTAT 5289 Score = 122 bits (134), Expect = 1e-22 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| | ||||| | || |||||||| || ||| | ||| | ||| || Sbjct 5288 ATGCAAATATTTGTTAAGACTTTGACCGGCAAAACCATCACTTTGGAGGTAGAATCATCG 5347 Query 124599 GATACAATTTCTAA-TTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || || ||||| || ||||| || || || |||||||| || || || || Sbjct 5348 GATACTATCGAAAACGTTAAAGCA-AAAATCCAGGACAAGGAAGGTATTCCTCCAGACCA 5406 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | | || ||||| ||||| || || || ||| | || ||||| ||||| || Sbjct 5407 GCAGCGTTTGATCTTTGCTGGAAAGCAGTTGGAAGATGGGCGCACATTGTCGGATTACAA 5466 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| ||||| || ||||||||||| || ||| | || ||||| || Sbjct 5467 CATACAAAAGGAATCCACATTGCATTTGGTGTTGCGTCTCCGTGGTGGAAT 5517 Score = 111 bits (122), Expect = 2e-19 Identities = 192/273 (70%), Gaps = 6/273 (2%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||||||| | || || | || || ||||| || ||| | ||| | ||| | Sbjct 5515 AATGCAAATATTTGTTAAAACTTTGACTGGGAAAACGATTACTTTGGAGGTGGAACCGTC 5574 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 || || || || ||||| || ||||| || || || |||||||| || || || | Sbjct 5575 GGACACTATCGAAAACGTTAAAGCA-AAAATCCAGGACAAGGAAGGTATTCCTCCAGACC 5633 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || | | || ||||| || ||||| || || ||| | || ||||| ||||| | Sbjct 5634 AGCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGGCGCACATTGTCGGATTACA 5693 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAAT 124775 | || ||||| ||||| || ||||||||||| || ||| | || ||||| || ||| || Sbjct 5694 ACATACAAAAGGAATCCACATTGCATTTGGTGTTGCGTCTCCGCGGTGGAATGCAAATAT 5753 Query 124776 TCATAAAAA--TTGATTGTAAATAAATATCACT 124806 | | |||| |||| || ||| || |||||| Sbjct 5754 TTGTTAAAACTTTGACTGGAAA-AACGATCACT 5785 Score = 87.8 bits (96), Expect = 3e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||||||| | || || | || || ||||| || ||| | || | ||| | Sbjct 5743 AATGCAAATATTTGTTAAAACTTTGACTGGAAAAACGATCACTTTGGAAGTGGAACCGTC 5802 Query 124598 TGATACAATTTCTAA-TTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 || || || || ||||| || ||||| || || || |||||||| || || || | Sbjct 5803 GGACACTATCGAAAACGTTAAAGCA-AAAATCCAGGACAAGGAAGGTATTCCTCCAGACC 5861 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || | | || ||||| || ||||| || || ||| | || ||||| ||||| | Sbjct 5862 AGCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGGCGCACATTGTCGGATTACA 5921 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 | || ||||| ||||| ||| | || ||||| || ||| | || || ||| Sbjct 5922 ACATACAAAAGGAATCTACTCTTCACTTGGTGTTGCGTCTCCGCGGAGGT 5971 >seq4837 Length=103144 Score = 140 bits (154), Expect = 5e-28 Identities = 421/648 (65%), Gaps = 9/648 (1%) Strand=Plus/Minus Query 205320 TTTTATTTTTAATTTTGGAAATGGGTTTGGTGTACGTTCTAATTGtttttttAATCCATT 205379 ||||||| | ||||| ||||||| | ||| | ||| |||||| | ||| ||| | Sbjct 6244 TTTTATTATCAATTTAGGAAATGCATGCGGTTTGCGTGTTAATTGCTCTTTCAATGGTTG 6185 Query 205380 AATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAA 205439 ||||| | ||| || || | || || || | || | ||| || |||||| | Sbjct 6184 GATATGCGTTTTATAAATGTGCGTATCGCCGGTAGTGTGTACAAAATCGCCTGGTTTAAG 6125 Query 205440 ATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTAC 205499 |||||||||||||||||| | || ||||| ||| || | ||||||||| || Sbjct 6124 GCCGGTTAAATGTGCAATCATAGAGGTTAATAATGCATACGATGCTATATTAAATGGGAC 6065 Query 205500 ACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTAAT 205559 ||| | ||||| || || | ||||| | |||||||| || | |||||| Sbjct 6064 ACCCAGCCCCATGTCGGCACTGCGCTGATAAAGTTGACATGACAG---CTCATTATTGGC 6008 Query 205560 TACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATCTATAGG 205619 ||||| || || | || ||||| || ||||||| |||| ||| | ||||| || Sbjct 6007 TACATAGAACTGGGCCAAGCAATGGCAGGGTGGTAAGGCCATTTTTGGTATATCTACTGG 5948 Query 205620 ATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAAT 205679 |||||| | | || || ||| || | ||| || | ||||| | | || || Sbjct 5947 ATTCCAAGAGGACAAAATCATACGTCGATCAGTAGGATTTGTAGTTATTGTCCTAATTAT 5888 Query 205680 ATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAAT---ATATTT 205736 || | |||||||| | ||| | ||| || ||||| | | | |||||| Sbjct 5887 CTGCTTCAATTGATCGACTCC---CTCCGTACCATAAGTATCGCGACAAGTGCGATATTT 5831 Query 205737 AGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATC 205796 || |||||||| |||||||||||||| |||| ||| || || || ||||||| | ||| Sbjct 5830 TGCCCCAAAATGGCGCCATTGAAAACCGTAAATTGGCCCCAAGTCGCCTTCTTCGCGATC 5771 Query 205797 ATTAAAACCACGtttttttatatattttaatgatccattttcatcccaaatatggattcc 205856 | | || || | | | | | | ||| | || ||| ||| || || || Sbjct 5770 ACTGAACCCGCATCTATCCAAAAATTCGCGGCTAGCGTTACCATTCCAGATGTGAATGTT 5711 Query 205857 tttattttttaGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAATTCTTCAAC 205916 ||| || | ||||| || | || ||| || ||||||||| | || |||||| Sbjct 5710 TTTGTTCTGTAGAACTTTCGCATCAGTGCTGCCGCTTATAAACCAGAGTAGCTCTTCACA 5651 Query 205917 AATTCCTCTCCAAAACATTGATTTTGTTGTAAATAATGGAAATGAATC 205964 | | | | ||| |||| | ||||||||| ||||| || ||||| || Sbjct 5650 CACTGCACGCCAGAACACTTTTTTTGTTGTTAATAACGGGAATGATTC 5603 >seq23389 Length=58516 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| |||| || ||||| ||||| || || ||| | ||| | ||| | Sbjct 44628 ATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCCTCG 44569 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| ||||| || ||||| || ||||| || || ||||| || || Sbjct 44568 GACACTATTGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGACCAG 44509 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | ||||| || ||||| ||||| || ||| | || ||||| ||||||||| Sbjct 44508 CAGCGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACATTGTCCGATTATAAT 44449 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 |||||||||||||| || || ||| | || | ||||| |||||||| Sbjct 44448 ATTCAAAAAGAATCCACCTTACATCTTGTGCTGCGTTTGCGAGGTGG 44402 >seq11312 Length=46762 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | || || || || ||||||||||| ||| | || |||| | Sbjct 38155 AATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGCCTTC 38214 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| | || |||||||| ||||||||||| || || || ||||| Sbjct 38215 CGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAGATCA 38274 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | ||||| || || || ||||| || ||| | || || ||| || || || Sbjct 38275 ACAACGTTTGATTTTCGCTGGCAAGCAATTGGAAGATGGACGCACGTTATCCGACTACAA 38334 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || || || ||||| ||||| | ||| | || ||||| || Sbjct 38335 CATACAAAAGGAGTCGACCTTGCACTTGGTACTCCGTCTCCGTGGTGGCAT 38385 >seq181 Length=60274 Score = 98.7 bits (108), Expect = 1e-15 Identities = 168/240 (70%), Gaps = 3/240 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | || || |||| || || || || ||| |||| | ||| | | Sbjct 37781 AATGCAGATTTTCGTGAAAACGTTAACGGGAAATACCATCACTTTAGATGTCGAACCGAC 37722 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||||| ||| | ||||||| || |||| ||||||| || || ||||| ||| Sbjct 37721 CGATACTATTGAAACGATTAAAACC-AAGATTCGGAATAAAGACGGCATCCCACCAAATC 37663 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 ||| | | |||| || || || || | || ||| || | |||||| || |||| Sbjct 37662 AACGTCGTTTGATTTACGCCGGCAAGCAGCTGGAAGATGGTTGCACATTAATGGACTATA 37603 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 | || ||||| | || ||| | ||||||||||||||||||| ||||||| |||||||| Sbjct 37602 ACATACAAAAGGGCTCGACTCTCCATTTGGTTTTACGTTTACTTGGTGGTA-TAAAAATT 37544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755228692732800