Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq4550 150 2e-31 seq23389 116 3e-21 seq4549 105 6e-18 >seq4550 Length=29190 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||||||||| | | |||||||||||| | ||||| || ||||| ||||||||||| Sbjct 5971 ACCTCCGCGGAGACGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCCGA 5912 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || |||||| ||| || | |||||| ||||| |||| | ||||||||| || ||||| Sbjct 5911 CAATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGG 5852 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || |||||||| |||||| |||||| | ||||| ||||||| || || Sbjct 5851 AATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCCGACGGTTCCAC 5792 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | |||||| || |||| |||||| ||||| || ||||| Sbjct 5791 TTCCAAAGTGATCGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 5744 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | | ||||||||| || | ||| || || ||||| ||||||||||| | Sbjct 5742 CCACCGCGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCCGAC 5683 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | |||||| ||| || | |||||| ||||| |||| | ||||||||| || ||||| Sbjct 5682 AATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 5623 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || || |||||||| |||||| |||||| | ||||| ||||||| || ||| Sbjct 5622 ATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCCGACGGTTCCACC 5563 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | |||||| || |||| |||||| ||||| || ||||| Sbjct 5562 TCCAAAGTAATCGTTTTCCCAGTCAAAGTTTTAACAAATATTTGCAT 5516 Score = 140 bits (154), Expect = 3e-28 Identities = 161/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||||||||| || | ||| || || ||||| ||||||||||| || |||||| ||| Sbjct 5500 CAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGCCCATC 5441 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || | ||| |||||||| |||| | ||||||||| || ||||| || || |||||||| Sbjct 5440 TTCCAACTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTC 5381 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCG 118704 |||||| |||||| | ||||| || |||| || | || ||||| | || | | Sbjct 5380 CTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGAT-TCTACCTCCAAAGTGATGG 5322 Query 118705 TTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||||||| ||| || ||||| || ||||| Sbjct 5321 TTTTGCCGGTCAAAGTCTTAACAAATATTTGCAT 5288 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || || | || ||||| |||| ||| || ||||| ||||||||||| ||| Sbjct 5288 TACCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGG 5229 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||||| || || | |||||| ||||| |||| | |||||| ||||| || | Sbjct 5228 AGAGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGTTGATCTGGTG 5169 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | | || || || ||| |||||| |||||| | || | || || | ||| | Sbjct 5168 GGACTCCTTCTTTATCTTGAATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAA 5109 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | ||| | ||||| || |||| || || || || |||||||| Sbjct 5108 CCTCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCAT 5060 >seq23389 Length=58516 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || ||||||||||| || |||||| || ||||| ||| || | || |||||| Sbjct 44432 GTGGATTCTTTTTGAATATTATAATCGGACAATGTGCGGCCATCTTCCAATTGCTTTCCA 44491 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | || | |||||||| ||||| || || ||||| ||||| ||| || ||| Sbjct 44492 GCGAAAATCAATCGCTGCTGGTCGGGTGGAATTCCCTCTTTGTCCTGAATCTTGGCTTTT 44551 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||| | ||||||| | |||||||| | || | || ||||| || || ||| Sbjct 44552 ACATTTTCAATAGTGTCCGAGGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTTAGGGTT 44611 Query 118722 TTTACAAAAATCTGCAT 118738 ||||||||||||||||| Sbjct 44612 TTTACAAAAATCTGCAT 44628 >seq4549 Length=20005 Score = 105 bits (116), Expect = 6e-18 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCT 118587 ||||| || | ||| ||||| |||||||||||||||| | |||| | |||| || | Sbjct 19915 ACCAAATGCAATGTCGACTCCTTTTGAATGTTGTAAT--CAGATAGGGTGCGTCCGTCTT 19858 Query 118588 CGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647 | | || || ||||| | || | ||| |||||||| || || || || ||||||||| Sbjct 19857 CCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTT 19798 Query 118648 TAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTT 118707 |||||| || || | ||| | |||||| | |||||| || | ||| | || | Sbjct 19797 GAATTTTAGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCGACTTCTAGGGTGATGGTCT 19738 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| |||| ||||| || ||||| ||||| Sbjct 19737 TGCCAGTCAATGTTTTGACGAAAATTTGCAT 19707 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| ||||||| | | ||||| || | ||| ||||| || ||||| |||||||| Sbjct 19707 TACCACCGCGTAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCAG 19648 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || ||||| || || | || || ||||| | || | ||| |||||||| || | Sbjct 19647 ACAAGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGG 19588 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || ||||||||| |||||| ||||| | ||||| || |||| || | || Sbjct 19587 GAATACCTTCCTTGTCTTGAATTTTAGCCTTAACATTTTCGATAGTATCCGATGGT-TCA 19529 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || | |||||||| || | ||||||||||| || ||||| Sbjct 19528 ACTTCCAAAGTAATAGTTTTGCCAGTTAATGTTTTTACAAAGATTTGCAT 19479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433703129209132