Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq20437 91.5 3e-13 >seq20437 Length=48329 Score = 91.5 bits (100), Expect = 3e-13 Identities = 134/187 (72%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 188489 TACTGGATGTTTAGAGATCAACGTGTACAAGATAATTGGGCTTTAATTTACGCACAACGA 188548 || ||||||| | ||||||||||||| ||||| |||||||| || | ||||| || || Sbjct 16929 TATTGGATGTATCGAGATCAACGTGTCCAAGACAATTGGGCCTTTTTGTACGCTCAGCGT 16870 Query 188549 TTAGCGTTAAAACTCAAAATACCTCTAAGAATATGCTTTTGTGTCGTGCCAAAATTTCAC 188608 || || |||||||| || ||||||| | |||| |||||| | | || || | || Sbjct 16869 TTGGCTTTAAAACTTGAACTACCTCTTTGCGTATGTTTTTGTCTTTTACC-CAAGTACAT 16811 Query 188609 AC-TACTACTTCTAGACACTTTATGTTTTTAATATCCGGTCTTAAAGAAGTCGCGGAAGA 188667 || ||| || || || | || ||| | || |||| | |||||||| | ||||| Sbjct 16810 ACATACCACGCTAAGGCATTATAAATTTATGTTAACCGGCTTGGAAGAAGTCTCTGAAGA 16751 Query 188668 ATGTAAA 188674 |||| || Sbjct 16750 ATGTGAA 16744 Score = 89.7 bits (98), Expect = 9e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 189464 CAAATGCAGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTATTGGGCTAAG 189523 ||| |||| || || |||| || |||||||| | ||||| || |||||||||||||| Sbjct 15939 CAACTGCAATTGATGCGAGAGGGTAAAATGCACGGCTTTTTGCGCATGTATTGGGCTAAA 15880 Query 189524 AAGATACTTGAATGGACTAGAACACCTGAAGACGCTTTG 189562 ||||| | |||||| ||| || ||||||||||||||| Sbjct 15879 AAGATTTTAGAATGGTCTAAAAGCCCTGAAGACGCTTTG 15841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922919021622840