Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq4550 129 7e-25 seq23389 114 1e-20 seq5343 95.1 1e-14 seq11245 91.5 2e-13 seq7230 91.5 2e-13 seq4549 87.8 2e-12 seq1252 84.2 3e-11 >seq4550 Length=29190 Score = 129 bits (142), Expect = 7e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||||||||||||||||||| |||||||| || |||||||| | || || ||| | Sbjct 5503 ACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGCCC 5444 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || | |||||| ||||| || || | ||||||||||| | || | | ||||| Sbjct 5443 ATCTTCCAACTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTT 5384 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| ||||||| ||| | | | | || || ||||| || || | ||||| Sbjct 5383 GTCCTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGATTCTACCTCCAAAGTGAT 5324 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||||||| || | ||||| ||||| |||||||| Sbjct 5323 GGTTTTGCCGGTCAAAGTCTTAACAAATATTTGCAT 5288 Score = 116 bits (128), Expect = 4e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||||||||||||||||||| |||||||| || |||||||| | || || ||| | Sbjct 5731 ACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGCCC 5672 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || | ||| || ||||| || || | ||||||||||| | || | | ||||| Sbjct 5671 ATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTT 5612 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| ||||||| ||| | | | | ||||| || |||||| || | || || Sbjct 5611 GTCCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCCGACGGTTCCACCTCCAAAGTAAT 5552 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 ||||| || || | || || ||||| ||||||||| Sbjct 5551 CGTTTTCCCAGTCAAAGTTTTAACAAATATTTGCATT 5515 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | |||||||||||| || | || |||||||| || |||||||| | | Sbjct 5970 CCTCCGCGGAGACGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCCGAC 5911 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || ||| | || || | ||| || ||||| || || | ||||||||||| | || Sbjct 5910 AATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 5851 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | ||||||||| ||||||| ||| | | | | ||||| || |||||| Sbjct 5850 ATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCCGACGGTTCCACT 5791 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | ||||| ||||| || || | || || ||||| ||||||||| Sbjct 5790 TCCAAAGTGATCGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCATT 5743 >seq23389 Length=58516 Score = 114 bits (126), Expect = 1e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| |||| ||||||| ||| | ||| || ||| || ||||||||||| ||||| | Sbjct 44401 TCCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGA 44460 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || | || || | ||||| |||||||| || | |||||||||||||| || Sbjct 44461 CAATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGCTGCTGGTCGGGTGG 44520 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134 | | ||| |||||| ||| | || | ||| | | | | ||||| | ||| | Sbjct 44521 AATTCCCTCTTTGTCC-TGAATCTTGGCTTTTACATTTTCAATAGTGTCCGAGGGTTCGA 44579 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 | || | |||||||| ||||||||||| || |||||||| || ||||| || Sbjct 44580 CCTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 44631 >seq5343 Length=52442 Score = 95.1 bits (104), Expect = 1e-14 Identities = 71/83 (86%), Gaps = 3/83 (4%) Strand=Plus/Plus Query 60055 TGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 |||||||| |||| || | |||||| |||||| ||||||||||||||||||||| || Sbjct 41344 TGAAAAAT---CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 41400 Query 60115 ACTCACCACTATACTACCGAGGA 60137 ||| |||||||||||| |||||| Sbjct 41401 ACTAACCACTATACTATCGAGGA 41423 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/97 (81%), Gaps = 6/97 (6%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 40829 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 40888 Query 60126 TACTACCGAGGA---TTGAATATATAACTTGAATATT 60159 ||||| |||||| ||||| | || ||| ||||| Sbjct 40889 TACTATCGAGGACAGTTGAAGA---AATTTGTATATT 40922 >seq11245 Length=3984 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 2767 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 2708 Query 60126 TACTACCGAGGATTG 60140 ||||| |||||| || Sbjct 2707 TACTATCGAGGACTG 2693 >seq7230 Length=19746 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 72 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 131 Query 60126 TACTACCGAGGATTG 60140 ||||| |||||| || Sbjct 132 TACTATCGAGGACTG 146 >seq4549 Length=20005 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||||||||| |||||||||||| |||||||||| || || || |||| || Sbjct 19915 ACCAAATGCAATGTCGACTCCTTTTGAATGTTGTAATCAGATAGGGTGCGTCCGTCTTCC 19856 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 | ||||| ||||| || || | || ||||| || | || | | ||||||| | || Sbjct 19855 AATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGT-CTTG 19797 Query 43095 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 | |||| | |||| | | | |||||| | || || || | |||||||| || Sbjct 19796 AATTTTAGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCGACTTCTAGGGTGATGGTCTT 19737 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || | || || || || |||||||| Sbjct 19736 GCCAGTCAATGTTTTGACGAAAATTTGCAT 19707 >seq1252 Length=1779 Score = 84.2 bits (92), Expect = 3e-11 Identities = 67/78 (86%), Gaps = 2/78 (3%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| | ||| ||||||| Sbjct 1324 CTCCCCGACGGGGAATTGAACCC-GGTCTCCCGCGTGACAGGCGGGGAAACTAACCACTA 1382 Query 60126 TACTACCGAGGAT-TGAA 60142 ||||| ||||||| |||| Sbjct 1383 TACTATCGAGGATATGAA 1400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571645547231880