Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020
14-03-12] 24,071 sequences; 363,107,242 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq4550 129 7e-25
seq23389 114 1e-20
seq5343 95.1 1e-14
seq11245 91.5 2e-13
seq7230 91.5 2e-13
seq4549 87.8 2e-12
seq1252 84.2 3e-11
>seq4550
Length=29190
Score = 129 bits (142), Expect = 7e-25
Identities = 158/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
|||||||||||||||||||||| |||||||| || |||||||| | || || ||| |
Sbjct 5503 ACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGCCC 5444
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
|| || | |||||| ||||| || || | ||||||||||| | || | | |||||
Sbjct 5443 ATCTTCCAACTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTT 5384
Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147
|||| ||||||| ||| | | | | || || ||||| || || | |||||
Sbjct 5383 GTCCTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGATTCTACCTCCAAAGTGAT 5324
Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
||||||||| || | ||||| ||||| ||||||||
Sbjct 5323 GGTTTTGCCGGTCAAAGTCTTAACAAATATTTGCAT 5288
Score = 116 bits (128), Expect = 4e-21
Identities = 156/217 (72%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
|||||||||||||||||||||| |||||||| || |||||||| | || || ||| |
Sbjct 5731 ACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGCCC 5672
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
|| || | ||| || ||||| || || | ||||||||||| | || | | |||||
Sbjct 5671 ATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTT 5612
Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147
|||| ||||||| ||| | | | | ||||| || |||||| || | || ||
Sbjct 5611 GTCCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCCGACGGTTCCACCTCCAAAGTAAT 5552
Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184
||||| || || | || || ||||| |||||||||
Sbjct 5551 CGTTTTCCCAGTCAAAGTTTTAACAAATATTTGCATT 5515
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
||||| | | |||||||||||| || | || |||||||| || |||||||| | |
Sbjct 5970 CCTCCGCGGAGACGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCCGAC 5911
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
| || ||| | || || | ||| || ||||| || || | ||||||||||| | ||
Sbjct 5910 AATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 5851
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136
| | ||||||||| ||||||| ||| | | | | ||||| || ||||||
Sbjct 5850 ATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCCGACGGTTCCACT 5791
Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184
|| | ||||| ||||| || || | || || ||||| |||||||||
Sbjct 5790 TCCAAAGTGATCGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCATT 5743
>seq23389
Length=58516
Score = 114 bits (126), Expect = 1e-20
Identities = 166/232 (72%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015
||| |||| ||||||| ||| | ||| || ||| || ||||||||||| ||||| |
Sbjct 44401 TCCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGA 44460
Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075
|| || || | || || | ||||| |||||||| || | |||||||||||||| ||
Sbjct 44461 CAATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGCTGCTGGTCGGGTGG 44520
Query 43076 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134
| | ||| |||||| ||| | || | ||| | | | | ||||| | ||| |
Sbjct 44521 AATTCCCTCTTTGTCC-TGAATCTTGGCTTTTACATTTTCAATAGTGTCCGAGGGTTCGA 44579
Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186
| || | |||||||| ||||||||||| || |||||||| || ||||| ||
Sbjct 44580 CCTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 44631
>seq5343
Length=52442
Score = 95.1 bits (104), Expect = 1e-14
Identities = 71/83 (86%), Gaps = 3/83 (4%)
Strand=Plus/Plus
Query 60055 TGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114
|||||||| |||| || | |||||| |||||| ||||||||||||||||||||| ||
Sbjct 41344 TGAAAAAT---CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 41400
Query 60115 ACTCACCACTATACTACCGAGGA 60137
||| |||||||||||| ||||||
Sbjct 41401 ACTAACCACTATACTATCGAGGA 41423
Score = 91.5 bits (100), Expect = 2e-13
Identities = 79/97 (81%), Gaps = 6/97 (6%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 40829 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 40888
Query 60126 TACTACCGAGGA---TTGAATATATAACTTGAATATT 60159
||||| |||||| ||||| | || ||| |||||
Sbjct 40889 TACTATCGAGGACAGTTGAAGA---AATTTGTATATT 40922
>seq11245
Length=3984
Score = 91.5 bits (100), Expect = 2e-13
Identities = 65/75 (87%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 2767 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 2708
Query 60126 TACTACCGAGGATTG 60140
||||| |||||| ||
Sbjct 2707 TACTATCGAGGACTG 2693
>seq7230
Length=19746
Score = 91.5 bits (100), Expect = 2e-13
Identities = 65/75 (87%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 72 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 131
Query 60126 TACTACCGAGGATTG 60140
||||| |||||| ||
Sbjct 132 TACTATCGAGGACTG 146
>seq4549
Length=20005
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034
|||||||||||||| |||||||||||| |||||||||| || || || |||| ||
Sbjct 19915 ACCAAATGCAATGTCGACTCCTTTTGAATGTTGTAATCAGATAGGGTGCGTCCGTCTTCC 19856
Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094
| ||||| ||||| || || | || ||||| || | || | | ||||||| | ||
Sbjct 19855 AATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGT-CTTG 19797
Query 43095 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153
| |||| | |||| | | | |||||| | || || || | |||||||| ||
Sbjct 19796 AATTTTAGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCGACTTCTAGGGTGATGGTCTT 19737
Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
||| || | || || || || ||||||||
Sbjct 19736 GCCAGTCAATGTTTTGACGAAAATTTGCAT 19707
>seq1252
Length=1779
Score = 84.2 bits (92), Expect = 3e-11
Identities = 67/78 (86%), Gaps = 2/78 (3%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | |||||| |||||| ||||||||||||||||||||| | ||| |||||||
Sbjct 1324 CTCCCCGACGGGGAATTGAACCC-GGTCTCCCGCGTGACAGGCGGGGAAACTAACCACTA 1382
Query 60126 TACTACCGAGGAT-TGAA 60142
||||| ||||||| ||||
Sbjct 1383 TACTATCGAGGATATGAA 1400
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571645547231880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |