Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq23389 93.3 6e-14 seq4549 87.8 3e-12 seq1380 86.0 9e-12 >seq23389 Length=58516 Score = 93.3 bits (102), Expect = 6e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 146074 ATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTG 146133 |||||| || |||||||| ||||||||||| || | || | || ||| || ||||| Sbjct 44425 ATGTAAGGTGGATTCTTTTTGAATATTATAATCGGACAATGTGCGGCCATCTTCCAATTG 44484 Query 146134 TTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| |||||||||| ||||| || || |||||||| ||||| || || Sbjct 44485 CTTTCCAGCGAAAATCAATCGCTGCTGGTCGGGTGGAATTCCCTCTTTGTCCTG 44538 >seq4549 Length=20005 Score = 87.8 bits (96), Expect = 3e-12 Identities = 153/228 (67%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | || | || |||||||| || || || || ||| || || || ||||| || Sbjct 19933 CCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTTTGA-ATGTTGTAATCAGA 19875 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 || || | | || || ||||| || |||||||||||||| | ||||||||| || || Sbjct 19874 TAGGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGG 19815 Query 146170 AATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTAC 146229 ||| ||||| || ||||| || || ||| || || Sbjct 19814 AATACCTTCCTTGTCTTGAATTTTAGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCGAC 19755 Query 146230 TTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||||| ||||| || || || || |||||||| | ||| |||||||| Sbjct 19754 TTCTAGGGTGATGGTCTTGCCAGTCAATGTTTTGACGAAAATTTGCAT 19707 >seq1380 Length=63849 Score = 86.0 bits (94), Expect = 9e-12 Identities = 123/173 (71%), Gaps = 3/173 (2%) Strand=Plus/Plus Query 209054 GTAAAAGGAAAAATAGTTGGATTATCTAAAGGATTACACGGATTTCATGTTCATGAATAT 209113 |||| ||| | ||| |||||||||||| |||||||| || ||||||||||| |||| Sbjct 30913 GTAACTGGAGAGATAAATGGATTATCTAAGGGATTACATGGTTTTCATGTTCACGAATTC 30972 Query 209114 GGTGATGTGAGTAATGGTTGTACATCAGCAGGAGAACATTTTAATCCATATAATAGACAA 209173 || || | ||| || || || || || || | ||||||||||| | |||| | | Sbjct 30973 GGGGACAATACTAACGGCTGCACTTCTGCCGGTGCGCATTTTAATCCTTGCAATAAAGAG 31032 Query 209174 CATGGAGATATTAGTGATAAAATACATCGTCATGTTGGTGATTTTGGTAATGT 209226 || |||| | |||||| | |||||| | |||||||| || ||||| Sbjct 31033 CACGGAGCACCCACTGATAA---TGAGCGTCATATCGGTGATTTGGGCAATGT 31082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743302682200320