Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq23389 105 4e-18 seq4550 95.1 8e-15 >seq23389 Length=58516 Score = 105 bits (116), Expect = 4e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || |||| | |||||| || ||||| || |||||| || || || || ||||| Sbjct 44401 TCCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGA 44460 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| | || ||||| ||||| || |||||||| | |||||||||||| || Sbjct 44461 CAATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGCTGCTGGTCGGGTGG 44520 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||| ||||| ||||| |||| || | || | || | | |||||| Sbjct 44521 AATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCAATAGTGTCCGAGGGTTCGAC 44580 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| || || ||||| ||||| |||||||| Sbjct 44581 CTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCAT 44628 >seq4550 Length=29190 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | || ||||| || || || ||| || ||||||||||| || || Sbjct 5515 TCCACCACGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCCGA 5456 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || || | || ||||||||||| || || || || | ||||||||||| || Sbjct 5455 CAATGTGCGCCCATCTTCCAACTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGAGG 5396 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340 | | |||||||| || ||||||||| | | | || | ||| | ||||| | Sbjct 5395 AATACCTTCCTTGTCCTGGAT-TTTTGCTTTAACGTTTTCGATAGTATCCGATGATTCTA 5337 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | |||| ||||||||||||||||| | ||| || ||||| || ||||| Sbjct 5336 CCTCCAAAGTGATGGTTTTGCCGGTCAAAGTCTTAACAAATATTTGCAT 5288 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || ||||| ||| | |||| ||| || ||||||||||| || ||| Sbjct 5970 CCTCCGCGGAGACGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCCGAC 5911 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | || | || |||||||| ||||| || || || | ||||||||||| || Sbjct 5910 AATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 5851 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | |||||||| || ||||||||| | | | || | || | || ||| || Sbjct 5850 ATACCTTCCTTGTCCTGGAT-TTTTGCTTTAACGTTTTCGATAGTGTCCGACGGTTCCAC 5792 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||| ||||| || || | |||||| ||||| || ||||| Sbjct 5791 TTCCAAAGTGATCGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 5744 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| ||||| || | || ||||| || || || ||| || ||||||||||| || || Sbjct 5743 TCCACCGCGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCCGA 5684 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || || | || |||||||| ||||| || || || | ||||||||||| || Sbjct 5683 CAATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGG 5624 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340 | | |||||||| || ||||||||| | | | || | || | || ||| | Sbjct 5623 AATACCTTCCTTGTCCTGGAT-TTTTGCTTTAACGTTTTCGATAGTGTCCGACGGTTCCA 5565 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | |||| || || ||||| || || | |||||| ||||| || ||||| Sbjct 5564 CCTCCAAAGTAATCGTTTTCCCAGTCAAAGTTTTAACAAATATTTGCAT 5516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322977221881760