Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq9454 248 8e-61 seq12580 84.2 2e-11 >seq9454 Length=16677 Score = 248 bits (274), Expect = 8e-61 Identities = 496/726 (68%), Gaps = 12/726 (2%) Strand=Plus/Minus Query 16050 CCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGT 16109 ||||||| || | || | ||| || ||| |||||||||| | ||| |||| || Sbjct 13724 CCAATTCTAATAGCAAACGATCGGCAACATATTCTATATATTTACACATACTTTCACTGT 13665 Query 16110 TCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCG 16169 |||| || ||||| | || || | |||||||| ||||| | |||||| || || || | Sbjct 13664 TCATGCCAATTAAGTCGACTGGTAAGGCTTCTGTCAAAAACTCTTTTTCAATTTTTACGG 13605 Query 16170 CTTCAATGATTATATCTCTTACTACACTATTTAA-CGGAGGGTTTAATAAGTGTTTAAAC 16228 | ||| | ||||| || | | | | | |||| ||| | || ||| ||||||||| Sbjct 13604 CATCAGTTATTATTTC-CAAAATCCGTTCTTTACTCGGTTTTTGTATTAAATGTTTAAAC 13546 Query 16229 ATTA-TACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAA 16287 |||| ||| ||||| ||||| ||||| ||||| || | ||| | || || || || Sbjct 13545 ATTAGTACC-GCAAATTCACAGTGCAAGCCTTCATCACGTGATATCATTTCATTAGAGAA 13487 Query 16288 TGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGA 16347 ||| | ||||||||||| ||| ||||| || | ||||||||| | || || ||| Sbjct 13486 TGTTAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGAAGCGAAGCTGCCACT 13427 Query 16348 AAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGT--TCTAttt 16405 |||||| |||||||| || || || || || | | ||||| || | | | | | Sbjct 13426 AAAGAAAATACCTTCGACAGCAGCGAAAGCTATGATACGCTCGCCAAAATTAGCCGAATG 13367 Query 16406 ttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCT 16465 | | ||||||| | |||||| | || || | ||||| | ||| |||| Sbjct 13366 CGA--TGATATCCATGCTAGAGCCCATTCGGCCTTCTTCTTAACCAATGGCATTGTCTCA 13309 Query 16466 ATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAA 16525 || |||||||| | ||| | |||||| ||| | ||||| || || || |||| | Sbjct 13308 ATGGCATTAAAGAGATATTCACGTTCTTTCTCATCCATGATATATGTTTCGATAAGTAGA 13249 Query 16526 CTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCT 16585 ||||||||||| ||||| | ||| ||||| || || |||||||| |||||||| | |||| Sbjct 13248 CTATACATTTCCGAATGCACATTTTCCATGGCAATTTGAAAACCGTAAAAGCAACGAGCT 13189 Query 16586 TCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCG 16645 || | |||||| || || | |||| | ||| |||| || || ||||| || |||||| Sbjct 13188 TCAGTTATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCG 13129 Query 16646 CTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCG--TTATCTGAAAGTT 16703 || |||||||| || | | ||| |||||||| |||| | || || Sbjct 13128 GATGCCGCAAAAAAAGCCAAAACATGTGAAATAAAATGCCGTTCGCCGTCACTTAACCGA 13069 Query 16704 TTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAA 16763 || ||| || | ||||| || | || |||||||| ||||||||||||| || Sbjct 13068 TT--CCAATCGTCCATGTCTTTAGAGAGGTCAACCTCTTCAGCAGTCCAAAAAGAGGCTT 13011 Query 16764 CAGCCT 16769 | |||| Sbjct 13010 CCGCCT 13005 >seq12580 Length=40245 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/150 (73%), Gaps = 3/150 (2%) Strand=Plus/Minus Query 133723 GAATTTAAAAAAGATCCAAAAAGAATGCATAACGGAACAATAGAATTTACAAGCATAGAT 133782 || |||||| |||||| |||| ||||||||||||||| ||||||| |||| || |||| Sbjct 14878 GACTTTAAACCAGATCCTAAAAAAATGCATAACGGAACTATAGAATATACATCCAGAGAT 14819 Query 133783 GCGCATTGCGGAGCATATCCTTCTAGAAGAGGAGACCTTGAAATTTTAGGATATTGTATG 133842 || ||| || | | | |||| |||| ||||| ||||| | || ||| ||| Sbjct 14818 GCTCATCAAGGTG---TTGCAACTAGGCGAGGTGACCTAGAAATAATGGGTTATAATATA 14762 Query 133843 ATAAAGTGGATGAGTGGTAAATTACCATGG 133872 ||| ||||| || | | ||||||| ||| Sbjct 14761 ATAGAGTGGTTGGGAGCGGAATTACCCTGG 14732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462372835920600