Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq9454 248 8e-61 >seq9454 Length=16677 Score = 248 bits (274), Expect = 8e-61 Identities = 479/705 (68%), Gaps = 4/705 (1%) Strand=Plus/Minus Query 14023 TTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCAT 14082 ||||||||| || | ||| |||| | || ||||||| | |||| |||| ||||| Sbjct 13720 TTCTAATAGCAAACGATCGGCAACATATTCTATATATTTACACATACTTTCACTGTTCAT 13661 Query 14083 ACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTC 14142 || |||| | || || | | || ||||| |||||||| || || || || Sbjct 13660 GCCAATTAAGTCGACTGGTAAGGCTTCTGTCAAAAACTCTTTTTCAATTTTTACGGCATC 13601 Query 14143 GTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAA 14202 |||| || | ||| ||| ||| || | | ||| ||||||||| |||| Sbjct 13600 AGTTATTATTTCCAAAATCCGTTCTTTACTCGGTTTTTGTATTAAATGTTTAAACATTAG 13541 Query 14203 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 14262 |||||| ||||| || | ||| ||||| | || | ||| || || |||||||| Sbjct 13540 TACCGCAAATTCACAGTGCAAGCCTTCATCACGTGATATCATTTCATTAGAGAATGTTAA 13481 Query 14263 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 14322 |||||||| | ||| ||||| |||| ||||||||| | |||||| || |||||| Sbjct 13480 ACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGAAGCGAAGCTGCCACTAAAGAA 13421 Query 14323 TATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGA 14382 || || || || ||||| || ||||| | || || ||||| || | || Sbjct 13420 AATACCTTCGACAGCAGCGAAAGCTATGATACGCTCGCCAAAATTAGCCGAATGCGATGA 13361 Query 14383 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT 14442 ||||||| | ||||||||| | || || |||| || |||||| ||||| ||||| Sbjct 13360 TATCCATGCTAGAGCCCATTCGGCCTTCTTCTTAACCAATGGCATTGTCTCAATGGCATT 13301 Query 14443 AAATAAATGTTCC--TTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 14500 ||| | || ||| |||| | | | | ||| || |||| || ||||||| |||||| Sbjct 13300 AAAGAGATATTCACGTTCTTTCTCATCCATGATAT--ATGTTTCGATAAGTAGACTATAC 13243 Query 14501 ATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGAC 14560 ||||| || || | |||||||| || || |||||||| ||||| || | |||||| | Sbjct 13242 ATTTCCGAATGCACATTTTCCATGGCAATTTGAAAACCGTAAAAGCAACGAGCTTCAGTT 13183 Query 14561 CATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCT 14620 ||| |||||| | |||||| ||| | ||||| |||||||| |||||||| || Sbjct 13182 ATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGGATGCC 13123 Query 14621 GCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAA 14680 |||||||| ||||| | | | |||||| | | || | | || | |||||| Sbjct 13122 GCAAAAAAAGCCAAAACATGTGAAATAAAATGCCGTTCGCCGTCACTTAACCGATTCCAA 13063 Query 14681 TCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAA 14725 ||| | | || ||||| || || || || ||| | ||||||||| Sbjct 13062 TCGTCCATGTCTTTAGAGAGGTCAACCTCTTCAGCAGTCCAAAAA 13018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482200468238280