Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq11312 111 1e-19 seq4549 107 1e-18 seq4550 104 2e-17 >seq11312 Length=46762 Score = 111 bits (122), Expect = 1e-19 Identities = 171/243 (70%), Gaps = 1/243 (0%) Strand=Plus/Minus Query 18095 TTAT-CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGT 18153 |||| || || || || | ||||||| ||| | || || || ||||| |||||||||| Sbjct 38387 TTATGCCACCACGGAGACGGAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTGTAGT 38328 Query 18154 CGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCA 18213 ||| | || | |||||||||||| ||||| || | || | | ||||||||| Sbjct 38327 CGGATAACGTGCGTCCATCTTCCAATTGCTTGCCAGCGAAAATCAAACGTTGTTGATCTG 38268 Query 18214 CGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCT 18273 || | |||||| ||||| ||||| |||||| | | ||| |||||| |||| Sbjct 38267 GAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCT 38208 Query 18274 CGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAAC 18333 | ||| | || || ||||||| || | ||||| || |||||||||||||||| | Sbjct 38207 CAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCATTTTTATAT 38148 Query 18334 TCT 18336 ||| Sbjct 38147 TCT 38145 >seq4549 Length=20005 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| || | ||| || || |||||||||||||| || | | || | ||| Sbjct 19918 AGGACCAAATGCAATGTCGACTCCTTTTGAATGTTGTAATCAGATAGGGTGCGTCCGTCT 19859 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||||||| ||||| ||| | || | | ||| ||||| ||| | |||||||| || Sbjct 19858 TCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCT 19799 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||||| |||||| | | ||| ||||| |||||| ||| | ||||||| | Sbjct 19798 TGAATTTTAGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCGACTTCTAGGGTGATGGTC 19739 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| ||||||||||| || ||||||||||| Sbjct 19738 TTGCCAGTCAATGTTTTGACGAAAATTTGCAT 19707 Score = 89.7 bits (98), Expect = 4e-13 Identities = 164/239 (69%), Gaps = 1/239 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || ||||| | || |||| || | ||| || || || ||||| ||||| || | | Sbjct 19705 CCACCGCGTAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCAGAC 19646 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||||||||||| ||||| ||| | || | | ||| ||||| ||| Sbjct 19645 AAGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGA 19586 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||||| || ||||| ||| || | | | | ||| || || || | Sbjct 19585 ATACCTTCCTTGTCTTGAATTTTAGCCTTAACATTTTCGATAGTATCCGATGGTTCAACT 19526 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT-TTTTAAACTCT 18336 || | || || ||||||| || |||||||||||||| |||||||| ||||||| ||| Sbjct 19525 TCCAAAGTAATAGTTTTGCCAGTTAATGTTTTTACAAAGATTTGCATTTTTTAAAATCT 19467 >seq4550 Length=29190 Score = 104 bits (114), Expect = 2e-17 Identities = 155/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| || ||||| |||||||| |||||||||||||||| | ||| | || |||| Sbjct 5268 ACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATTTTCC 5209 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 || |||||||| ||| |||| | | |||||||| || || ||||| ||||| | Sbjct 5208 AACTGTTTGCCAGCAAAGATCAAACGCTGTTGATCTGGTGGGACTCCTTCTTTATCTTGA 5149 Query 18237 ATTT--GTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTT 18294 |||| ||| || || | ||| ||| || ||||| || | |||||| ||| Sbjct 5148 ATTTTAGTT--TTAACATTCTCAATAGTATCGGATGGCTCAACCTCCAAGGTGATAGTTT 5091 Query 18295 TGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAA 18332 | || |||||||| || || || || |||||||| ||| Sbjct 5090 TCCCAGTCAATGTCTTCACGAAGATCTGCATTTTAAAA 5053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379232713628895