Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq4550 109 5e-19 seq4549 87.8 2e-12 >seq4550 Length=29190 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| |||||||||||||| || || || |||||||| || | || || ||| || Sbjct 5744 ATGCAAATATTTGTTAAAACTTTGACTGGAAAAACGATCACTTTGGAAGTGGAACCGTCG 5803 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | | |||| ||||| | |||||| | || ||||| | || |||||| Sbjct 5804 GACACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCAG 5863 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || ||||| || | ||| |||||||| |||||||| || || ||||||| | Sbjct 5864 CAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGGCGCACATTGTCGGATTACAAC 5923 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 ||||| || || | || ||||| || ||||| || | ||||||||| Sbjct 5924 ATACAAAAGGAATCTACTCTTCACTTGGTGTTGCGTCTCCGCGGAGGT 5971 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| |||||||||||||| || || || |||||||| || | || || ||| || Sbjct 5516 ATGCAAATATTTGTTAAAACTTTGACTGGGAAAACGATTACTTTGGAGGTGGAACCGTCG 5575 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | | |||| ||||| | |||||| | || ||||| | || |||||| Sbjct 5576 GACACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCAG 5635 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || ||||| || | ||| |||||||| |||||||| || || ||||||| | Sbjct 5636 CAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGGCGCACATTGTCGGATTACAAC 5695 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 ||||| || || |||| | ||||| ||||| || | ||||| || Sbjct 5696 ATACAAAAGGAATCCACATTGCATTTGGTGTTGCGTCTCCGCGGTGG 5742 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| ||||||||||| || || ||||||||||| || || | || || ||||| Sbjct 5288 ATGCAAATATTTGTTAAGACTTTGACCGGCAAAACCATCACTTTGGAGGTAGAATCATCG 5347 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | | | |||| ||||| | |||||| | || ||||| | || |||||| Sbjct 5348 GATACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCAG 5407 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || ||||| || | ||| || || || |||||||| || || ||||||| | Sbjct 5408 CAGCGTTTGATCTTTGCTGGAAAGCAGTTGGAAGATGGGCGCACATTGTCGGATTACAAC 5467 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACG 25046 ||||| || || |||| | ||||| ||||| || Sbjct 5468 ATACAAAAGGAATCCACATTGCATTTGGTGTTGCG 5502 >seq4549 Length=20005 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || ||||| ||||| ||||| |||||||| || || | || || ||| | Sbjct 19479 ATGCAAATCTTTGTAAAAACATTAACTGGCAAAACTATTACTTTGGAAGTTGAACCATCG 19538 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | | | |||| |||||||| |||||| | || ||||| | || || ||| Sbjct 19539 GATACTATCGAAAATGTTAAGGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGATCAG 19598 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 |||||||| || | ||| ||||| ||| ||||||| || || ||||||| Sbjct 19599 CAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCTTGTCTGATTACAAT 19658 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || ||||| ||| | || | ||||| || |||| | ||||| ||| Sbjct 19659 ATTCAGAAGGAGTCGACATTGCATTTGGTCCTACGTCTACGCGGTGGT 19706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418181284116320