Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq4837 118 2e-21 >seq4837 Length=103144 Score = 118 bits (130), Expect = 2e-21 Identities = 410/629 (65%), Gaps = 17/629 (3%) Strand=Plus/Plus Query 35175 TATCCATTTTTGGACCCCAAATGAGGTTCTCTCTTCGAGACGACACTATTCCAGTTCTCA 35234 |||| || ||||| | || ||| ||||| | | ||||| | ||||| ||| | | Sbjct 5565 TATCTATATTTGGTGCTCAGATGCGGTTCAATATGCGAGA----ATCATTCCCGTTATTA 5620 Query 35235 CTACCAAGAAAATT-TTCTGGAGAGGAGTTGTG-GAAGAACT-CTCGTGGTTCATCAGGG 35291 | ||| |||| | |||||| | | ||| ||| ||||| || ||| ||||| || || | Sbjct 5621 ACAACAAAAAAAGTGTTCTGGCGTGCAGT-GTGTGAAGAGCTACTC-TGGTTTATAAGCG 5678 Query 35292 GCAATACAGACGCCAAAGAATTGGCCAAGAAGAAGATACACATCTGGAACGCTAATGGGT 35351 ||| || || || |||| | || || || || ||||||||||| | ||| | Sbjct 5679 GCAGCACTGATGCGAAAGTTCTACAGAACAAAAACATTCACATCTGGAATGGTAACGCTA 5738 Query 35352 CGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCAGAGGGAGATTTGGGACCCG 35411 || ||||||||||| || | ||||| ||| | | ||| || || ||||| || Sbjct 5739 GCCGCGAATTTTTGGATAGATGCGGGTTCAGTGATCGCGAAGAAGGCGACTTGGGGCCAA 5798 Query 35412 TATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGATACCTGTTCTTCCGATTATA 35471 | ||||| || |||||||| |||||||| || ||||| || || | |||| | Sbjct 5799 TTTACGGTTTTCAATGGCGCCATTTTGGGGCAAAATATCGCAC---TTGTCGCGATACTT 5855 Query 35472 CTGGAA---AGGGTATTGATCAATTGGCCAATATACTAAAGACCCTGAGAGAAAATCCAG 35528 ||| | |||| | ||||||||| | ||| | | ||| | | |||||| Sbjct 5856 ATGGTACGGAGGGAGTCGATCAATTGAAGCAGATAATTAGGACAATAACTACAAATCCTA 5915 Query 35529 ATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGCTCTTC 35588 |||| || | |||||| || | | |||||||| | ||| | | ||||| | | Sbjct 5916 CTGATCGACGTATGATTTTGTCCTCTTGGAATCCAGTAGATATACCAAAAATGGCCTTAC 5975 Query 35589 CTCCATGCCACATGACT-GCTCAATTTTATGTGGCTAATGGAGAATTGTCGTGCCAGTTG 35647 | || ||||| || | || || || ||||| || ||| || |||| || || | Sbjct 5976 CACCCTGCCA-TTGCTTGGCCCAGTTCTATGTAGCCAATAATGAGCTGTCATGTCAACTT 6034 Query 35648 TATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCATACTCTCTT 35707 |||||||| || | || | ||| |||| || || || ||||| ||||| || | | Sbjct 6035 TATCAGCGCAGTGCCGACATGGGGCTGGGTGTCCCATTTAATATAGCATCGTATGCATTA 6094 Query 35708 CTGACTCATCTGATGGCCAGTATGGTGGGTCTAAAACCGGGAGAGTTTATCCTCACTCTT 35767 | || | |||| || | | || || ||||| || || ||| | | |||| Sbjct 6095 TTAACCTCTATGATTGCACATTTAACCGGCCTTAAACCAGGCGATTTTGTACACACTACC 6154 Query 35768 GGTGACGCACACATTTATAATACCCACAT 35796 || || | ||||||||||| || || || Sbjct 6155 GGCGATACGCACATTTATAAAACGCATAT 6183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989278802707805