Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq15038 351 9e-92 seq9454 273 2e-68 seq17808 143 2e-29 >seq15038 Length=36294 Score = 351 bits (388), Expect = 9e-92 Identities = 1208/1863 (65%), Gaps = 32/1863 (2%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || ||||| || | ||| ||||||| ||| | || ||||| | |||||||| || ||| Sbjct 4452 TCGACTGTAAACTGTATGGGATTTGCTGCTGGCTTCGTTCTTAGGTAATACATACCGGTT 4511 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 |||| || | |||| || |||||||| ||| | | ||| | || |||| | | Sbjct 4512 TTTAAGCCGGCTTTCCAACCATAAAAATGTATAGAAGATAATTTACCATAACTAGGTTCA 4571 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 ||| | ||| | | |||||| ||||| || ||||| || || | || | ||||| Sbjct 4572 GCTACGTGTATGTTAAATGATTGGCTTTGGTCGATAAAAGCTCCGCGATCAACAGCCATG 4631 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT 37029 | | | | || || || |||||||| |||||||||| || |||||| | || Sbjct 4632 TTGATGGTTGACTTCACCGAAATTTCCCAAACTGTTTTATATAATTCTTTTATGCTTTCA 4691 Query 37030 GGTAAATCTAA-ATGTT--GAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCA 37086 |||| || ||||| | || || || |||| || ||| || || |||| | Sbjct 4692 GGTATGGCTTCGATGTTTTGTATTGAGCCGCGATGTGCCAATATTAAGTTTTTCATGTTA 4751 Query 37087 TTATTCCACATATTTCTACTTATT-AGTTCTCTCAATAGGTGTGGATTTACAACCTGAAA 37145 | |||||| | | | | | | | ||| | | | || |||| || || ||| Sbjct 4752 TCATTCCAAAGGCC-CAATTCAGTCAAATCTTTAAGCAAATGATGATTGACTACGATAAA 4810 Query 37146 ATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATT 37205 || ||||| | ||| | || ||| || || || |||||| || |||| ||||| || Sbjct 4811 CTCACCAGACAGTACGCGTCGTGTGTAAATGTTTGAAGTATACGGCTCAAAAGACTCGTT 4870 Query 37206 ATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCT 37265 |||| | ||||||| ||||| || ||||||||||| |||| || | ||| | Sbjct 4871 GTTACCAAGAATTTGAGCAGTAGACGCCGTAGGCATTGGAGCTACCAGCAAAGAATTGCG 4930 Query 37266 CAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTT 37325 || |||| | ||||| | ||| || | ||||| ||||| | | || || | Sbjct 4931 CACTCCACACCTTTTAATGTCGTCTTTAAGAGCGGACCAATTCCATAGACCAGTAGGCGT 4990 Query 37326 CTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTC 37385 || ||||||||||||||| || ||||||||||| ||||| | | | |||||| || Sbjct 4991 TTTATCCCACATATCATATTGAAGGATACCTTTACTAACTGGACTACCTTCATATGTTTC 5050 Query 37386 ATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGT 37445 || || ||||| | ||| || | ||| ||||||| ||||| || | ||||||||||| Sbjct 5051 GTACGGACCGTATAGTTTGGCCAATTCACAACTAGCTTCTAAGGCACCGTAATATATTGT 5110 Query 37446 TTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAA 37505 ||| ||||||||| ||||||| | || | |||||| ||| | | ||| | || ||| Sbjct 5111 TTCAAAAATTTGTTTATTTAAGCGTGCAGCATTTTCGCTTTCGTAGGGATAACGCATTAA 5170 Query 37506 TATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGA 37565 || | | ||||| || || || || || | ||| || || | ||| |||||| Sbjct 5171 AATTAGTGCGTCAGCAAATCCTTGGACGCCTAAACCAATTGGACGATGACGAAAATTAGA 5230 Query 37566 TCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAAC 37625 | | ||| || ||| || ||||||||||| |||||||| || ||||| | Sbjct 5231 CTTTCTGGTTTCCGGCAATGGGTAGTAATTGATATCGATTATTTTGTTGAGATTCCTTGT 5290 Query 37626 TAGTATTTTCGTAATTATTCTCAACTTGTCGAACAT-AAATACGTTAT---TATTAACAA 37681 || | || | || | | | | |||| ||| || | || |||| | | || | Sbjct 5291 TATAAGCTTTGCAACTTCTTTGAGTTTGT-GAAAATCATATTGTTTATTTGTCGTTACGA 5349 Query 37682 ATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATT 37741 | || |||||| ||| ||| | ||||| || || || | ||| || | || ||| Sbjct 5350 ACATATTCAACGCAATTGATGCCAGATTGCAAACTGCTATTTCTTCAGCCGACGTATATT 5409 Query 37742 GTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATT 37801 | || |||||||| | ||||| || | || || || | ||| |||||| || Sbjct 5410 CGACGATTTCTGTACATAAGTTACTGCATTTTATAGTGCCAACATTCTGTTGATTACTTT 5469 Query 37802 TTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGC-CTCG 37860 | || |||| ||||| || || || || || ||||| ||||| ||| || || Sbjct 5470 TGCGGTTGCAAGCGTCTTTGTAAAGCATGTAAGGAGTTCCGGTTTCTACTTGGGCACTGC 5529 Query 37861 ATAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCTTTAAt--ttttttCTTTGT-T 37917 || || | |||||| | ||||| || | ||| | ||| | | || | Sbjct 5530 AT-ATTGCGAACCATAAGTCACGAGCTTT---TATTGTTTTGTTCGCTTTGCCCTCGTCT 5585 Query 37918 TCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACA--TCGCATAATCCTGGAC 37975 ||||||| | |||||| | | ||| | | | ||||| | || || || || || | Sbjct 5586 TCGTATTTCACGTATAATCTATCAAATT--TGTCTCCATAAATTTCACACAAGCCAGGGC 5643 Query 37976 ATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAAT 38035 ||| ||||||||||||||||| | ||||| || || | || ||| || | || Sbjct 5644 ATTTATGGGGACACATTAGAGACCAATGCTCATCAGCCTCAACTCTTTTCATGAACAGAT 5703 Query 38036 CAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCT 38095 |||||| ||| | ||| |||||||||| | | || || || || || ||| | Sbjct 5704 CAGGTATCCACAGAGCATAAAATAAATCTCGTGCACGATCCTCCTCTTTACCCGTATTTT 5763 Query 38096 TTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTG 38155 || | || ||||||| ||||| ||||| |||||||| || |||| || || | | | Sbjct 5764 TTTTCAAATTTAGAAATTCGAAAATATCTGCGTGCCAAGGCTCTAAGTATATAGCAAAAG 5823 Query 38156 CTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTA 38215 | || || | ||| |||| || || | | ||| | | || || | | | | Sbjct 5824 CCCCCGGACGTTTTCCACCACCTTGGTCGACATAACGGGCAACATTGTTGAACAGACGCA 5883 Query 38216 ACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTC 38275 ||||||| || | ||| | |||| | | | ||| ||| | | ||| || || |||| Sbjct 5884 ACATAGGAACAAGACCGTCAGATACGTCACTATTACAAGATGTCTTAGTCCCTTTTGCTC 5943 Query 38276 GTAT--ATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTG 38333 |||| | | ||| | | ||||||||||| || || || ||| ||| ||||| Sbjct 5944 GTATGCAATGAATATTTAGA--CCTATTCCACCGGCCGACTTAGAAATTTTAGCACATTG 6001 Query 38334 TTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACT 38393 | || | | | ||||| || || ||| ||| || | ||| | || || Sbjct 6002 GTCTACAGCCTTCATAATACCATCAATGGAGTCTTCCGGCATAGTTAGCAAGAAGCAGGA 6061 Query 38394 AGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCA 38453 |||| ||| || | || | || |||||| || || || ||||| | || | Sbjct 6062 CGACAATTGTGGACGTATGGTAGCAGCACCAAATAAAGTTGGGGAAGCATGAGTAAAGTA 6121 Query 38454 TTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACC 38513 ||||||| |||||| ||||| || | | || || ||| |||||||||| || Sbjct 6122 ACCCTCCGACATGAGATTATAAGTTTCAATAGCCGCTTCAATGTCATCGCCGTGAATGCC 6181 Query 38514 TAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTT---ATTATTCTGTTT 38570 | || || | ||||| |||||||||||| | || | ||||| ||| || ||| Sbjct 6182 AATAGCGACACGCATTAACATATGTTGTGGCCGCTCCACAATTTTGCCGTTAATC--TTT 6239 Query 38571 AAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTATC 38630 || || ||| ||| |||||| ||||| | |||||| || |||| | |||| | ||| Sbjct 6240 AA-TAAATAAGATCGTTCTAAAGTTTTAAAGCCAAAAAAATTATAACTAAAATCGCGATC 6298 Query 38631 GTA 38633 || Sbjct 6299 ATA 6301 >seq9454 Length=16677 Score = 273 bits (302), Expect = 2e-68 Identities = 477/690 (69%), Gaps = 7/690 (1%) Strand=Plus/Minus Query 11464 ATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGATCCAC 11523 ||| || || |||||||||| | | |||| || ||||| || || | || || Sbjct 13705 ATCGGCAACATATTCTATATATTTACACATACTTTCACTGTTCATGCCAATTAAGTCGAC 13646 Query 11524 CGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGT 11583 || | || ||||||||||||| ||||| || || || |||||| | ||||| | Sbjct 13645 TGGTAAGGCTTCTGTCAAAAACTCTTTTTCAATTTTTACGGCATCAGTTATTATTTCCAA 13586 Query 11584 TATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACGCAAAATCACA 11643 || ||| ||| ||| |||| ||||||||||||||||| |||||| ||||| Sbjct 13585 AATCCGTTCTTTACTCGGTTTTTGTATTAAATGTTTAAACATTAGTACCGCAAATTCACA 13526 Query 11644 ATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCC 11703 || || ||||| || | ||| | ||||||||| |||||||| || ||||| | ||| Sbjct 13525 GTGCAAGCCTTCATCACGTGATATCATTTCATTAGAGAATGTTAAACCTGGCATTATTCC 13466 Query 11704 TCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGC 11763 ||||| |||| ||||||||| | ||| || ||| |||||| || || || ||||| Sbjct 13465 ACGTTTCTTTAGCCAAAATATCGAAGCGAAGCTGCCACTAAAGAAAATACCTTCGACAGC 13406 Query 11764 TGCAAATGCTACTACTCTTTCTCCATA--TACCTTGTTGCTA-GATATCCATTTTCTGGC 11820 || || |||| | | || ||| | || | ||| | ||||||||| | || Sbjct 13405 AGCGAAAGCTATGATACGCTCGCCAAAATTAGCCGAATGCGATGATATCCATGCTAGAGC 13346 Query 11821 CCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCATT-- 11878 ||| || || ||||| || || || |||||| || || || ||||| | || ||| Sbjct 13345 CCATTCGGCCTTCTTCTTAACCAATGGCATTGTCTCAATGGCATTAAAGAGAT--ATTCA 13288 Query 11879 TTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATA 11938 |||| | | ||| | | |||||| || || | || |||||||||||| ||||| | | Sbjct 13287 CGTTCTTTCTCATCCATGATATATGTTTCGATAAGTAGACTATACATTTCCGAATGCACA 13228 Query 11939 TTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACA 11998 |||||||| || |||||||| || || || || || || || | || || || Sbjct 13227 TTTTCCATGGCAATTTGAAAACCGTAAAAGCAACGAGCTTCAGTTATTTGAACCTCTTGG 13168 Query 11999 TAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGT 12058 |||||| |||| ||||||||||||| ||||||||||| | |||||||| || | Sbjct 13167 GAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGGATGCCGCAAAAAAAGCCAAA 13108 Query 12059 ATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTT 12118 | |||| ||||| | |||| | | | |||| || |||||| || | ||||| Sbjct 13107 ACATGTGAAATAAAATGCCGTTCGCCGTCACTTAACCGATTCCAATCGTCCATGTCTTTA 13048 Query 12119 GATAAATCTACTTCTTCAACGGTCCAAAAA 12148 || | || || |||||| | ||||||||| Sbjct 13047 GAGAGGTCAACCTCTTCAGCAGTCCAAAAA 13018 >seq17808 Length=19168 Score = 143 bits (158), Expect = 2e-29 Identities = 677/1061 (64%), Gaps = 21/1061 (2%) Strand=Plus/Minus Query 37585 GGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATT 37644 ||||| ||||||| || ||||| || || || ||| | || | || |||| | | Sbjct 19168 GGATAGTAATTGACGTCGATTATCTTGTTGAGGTTTCTTGTTATAAGCTTTGTAACTTCT 19109 Query 37645 CTCAACTTGTCGAACATAA-ATACGTTATTAT---TAACAAATTTACTCAACGAAATAGA 37700 ||| |||| ||| || | || | |||| | || || || |||||| ||| || Sbjct 19108 TTCAGTTTGT-GAAAATCATATTCTTTATCTGCCGTCACGAACATATTCAACGCAATTGA 19050 Query 37701 TCCTAGATTACATACAGCAACTTCATCTTCGTTACTAA-ATTGTATAATCTCTGTACAGA 37759 | ||||| || || || | |||||| | || || ||| | ||| |||||||| | Sbjct 19049 GGCCAGATTGCAAACTGCTATTTCATCAGCCG-ACGAATATTCGACAATTTCTGTACACA 18991 Query 37760 GATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTT 37819 ||||| || | || || || | ||| |||||| ||| |||||||| ||||| Sbjct 18990 AGTTACTACATTTTATAGTGCCAACATTCTGTTGATTACTTTTGCGATTACAAGCATCTT 18931 Query 37820 TATATAGTATATACGGCGTTCCTTGTTCTATTTGAGC-CTCGATAATAGATTTCCATAAA 37878 | || || || || || ||||| |||| ||| || || ||| | | ||| || Sbjct 18930 TGTAAAGCATGTAAGGAGTTCCGGTCTCTACTTGGGCGCTGCATATT-GCGAACCACAAG 18872 Query 37879 CTTCTTGCTTTAACGATCGCTTTAAttttttt--CTTTGT-TTCGTATTCTATATATAAT 37935 | |||| | | | |||| | ||| | | || ||| |||| |||||| ||| Sbjct 18871 TCACGAGCTTGTA---TTGTTTTATTCGCTTTACCCTCGTCTTCATATTTTATATACAAT 18815 Query 37936 TTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTAGA 37995 || | ||| | | || | || || || || || |||| || ||||||||| Sbjct 18814 TTATCAAATTTGTCTCCATAAACTTCTTCCAAGCCAGGGCATTTATGGGGGCACATTAGA 18755 Query 37996 GACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTA 38055 ||||| | ||||| ||||| | || ||| |||||||| |||| ||| | |||| | Sbjct 18754 GACCAATGCTCATCAGCCTCTACTCTTTTCATGAATAAATCTGGTATCCACAGTGCATAA 18695 Query 38056 AATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCG 38115 |||||||| | | | ||| || || || ||||||| | ||| ||||||| ||| Sbjct 18694 AATAAATCCCGTGCACGGTCTTCCTCCTTTCCCGTATTCTTTTTCAAGTTTAGAAATTCG 18635 Query 38116 AATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCT 38175 || ||||| |||||||| ||||||| ||| || | | || || || | ||| |||| Sbjct 18634 AAAATATCTGCGTGCCAAGGTTCTAAATATATAGCGAAAGCCCCCGGACGTTTCCCACCA 18575 Query 38176 CCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTA 38235 || || | | ||| | | || || | | | |||||||| || | |||| Sbjct 18574 CCTTGGTCTACATAACGGGCAACATTGTTGAAAAGACGCAACATAGGAACAAGTCCATCG 18515 Query 38236 GATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAAT 38295 || | | | | ||| ||||| | || ||||| ||||||| | || | Sbjct 18514 GACACGTCATCAACACCTGATATCTTCGTCCCCTTTACTCGTATGCAATGGATATTTAGG 18455 Query 38296 CCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCT 38355 ||||||||||| || || || ||| ||| ||||| | | | | || ||||| Sbjct 18454 CCTATTCCACCGGCCGACTTAGAAATTTTAGCACATTGGTCCACGGCCTTCAAAATACCA 18395 Query 38356 TCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTT 38415 | || ||| ||| || | |||| ||||| |||| ||| || | || Sbjct 18394 TGAATGGAGTCTTCCGGCATCGTAAGTAAGAAACAGGATGACAATTGTGGACGTATTGTA 18335 Query 38416 CCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATAT 38475 | || |||||| || || || |||||| |||| | ||||||| ||||| Sbjct 18334 GCAGCACCAAATAAAGTTGGGGAAGCATGTGTGAAGTAACGCTCCGACATGAGGTTATAA 18275 Query 38476 GTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATA 38535 ||||| || | | || || || | |||||||| || | | || | ||| | |||| Sbjct 18274 GTTTCAATAGCGGCCTCAATGTCGTCACCGTGAATGCCAATGGCGACACGCATCAACATA 18215 Query 38536 TGTTGTGGTCTTTCTATTATTTT---ATTATTCTGTTTAAGTAGATACGATTTTTCTAAT 38592 || ||||||| || | ||||| |||| || ||||| | ||| || |||||| Sbjct 18214 TGCTGTGGTCGCTCCACAATTTTTCCATTAATC--TTTAA-CAAATAAGACCGTTCTAAA 18158 Query 38593 GTTTTTATTCCAAAATAACTATATGAATAATCTCTATCGTA 38633 ||||| | |||||| || | || | |||| | ||| || Sbjct 18157 GTTTTGAAGCCAAAAAAATTGTAACTAAAATCGCGATCATA 18117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468383826744240