Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq4550 143 3e-29 seq4549 118 1e-21 seq23389 113 4e-20 seq15038 111 2e-19 seq11312 98.7 1e-15 >seq4550 Length=29190 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || ||||||| ||||| || ||||| ||||| ||||| | Sbjct 5970 CCTCCGCGGAGACGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCCGAC 5911 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| | ||||| | |||||| |||||| |||||| ||| ||||| || ||||| Sbjct 5910 AATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 5851 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||||||| ||| | | ||| | ||||| | || ||||| Sbjct 5850 ATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCCGACGGTTCCACT 5791 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||| || || ||||| ||||| || ||||||||||| Sbjct 5790 TCCAAAGTGATCGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 5744 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || || || | || || || ||||| ||||| ||||| | Sbjct 5742 CCACCGCGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCCGAC 5683 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| | ||||| | |||||| |||||| |||||| ||| ||||| || ||||| Sbjct 5682 AATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 5623 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||||||| ||| | | ||| | ||||| | || |||||| Sbjct 5622 ATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCCGACGGTTCCACC 5563 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||| || || ||||| ||||| || ||||||||||| Sbjct 5562 TCCAAAGTAATCGTTTTCCCAGTCAAAGTTTTAACAAATATTTGCAT 5516 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || || || | || || || ||||| ||||| ||||| | Sbjct 5514 CCACCACGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCCGAC 5455 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| | ||||| | ||| || |||||| |||||| ||| ||||| || ||||| Sbjct 5454 AATGTGCGCCCATCTTCCAACTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 5395 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||||||| ||| | | ||| | || || | | || ||| Sbjct 5394 ATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGATTCTACC 5335 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | || ||||||||||| || || || |||||||||||| Sbjct 5334 TCCAAAGTGATGGTTTTGCCGGTCAAAGTCTTAACAAATATTTGCATA 5287 >seq4549 Length=20005 Score = 118 bits (130), Expect = 1e-21 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| ||||||||||| ||||| | |||| |||||| | || || ||| Sbjct 19903 GTCGACTCCTTTTGAATGTTGTAATCAGATAGGGTGCGTCCGTCTTCCAATTGCTTGCCA 19844 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 ||| | |||| |||||||||||| || || || ||||| ||||| ||| |||| | || Sbjct 19843 GCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTC-TTGAATTTTAGCCTT 19785 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | ||| | ||||||| ||||| || || | ||| | |||||||| ||||| || Sbjct 19784 GACGTTTTCAATGGTGTCGGAAGGCTCGACTTCTAGGGTGATGGTCTTGCCAGTCAATGT 19725 Query 139747 TTTTACGAATATTTGCATA 139765 ||| ||||| ||||||||| Sbjct 19724 TTTGACGAAAATTTGCATA 19706 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| ||| | || || || | || ||||| || ||||| || ||||| | Sbjct 19705 CCACCGCGTAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCAGAC 19646 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||| | || || |||||| | |||| |||||||||||| || || Sbjct 19645 AAGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGA 19586 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| |||| | ||| | | ||| | || || | || || || Sbjct 19585 ATACCTTCCTTGTC-TTGAATTTTAGCCTTAACATTTTCGATAGTATCCGATGGTTCAAC 19527 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || ||||| || || |||||||| || |||||||| Sbjct 19526 TTCCAAAGTAATAGTTTTGCCAGTTAATGTTTTTACAAAGATTTGCAT 19479 >seq23389 Length=58516 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| ||||||| || | || | || || ||||||||||| ||||||||| | Sbjct 44402 CCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 44461 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| ||||| | || || ||||| | |||| || ||||| ||||| || Sbjct 44462 AATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGCTGCTGGTCGGGTGGA 44521 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || |||||||| ||| | || | ||||| | ||| | ||||| | ||| || || Sbjct 44522 ATTCCCTCTTTGTC-CTGAATCTTGGCTTTTACATTTTCAATAGTGTCCGAGGGTTCGAC 44580 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| || | |||||||| || | |||||||| || || |||||| Sbjct 44581 CTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATA 44629 >seq15038 Length=36294 Score = 111 bits (122), Expect = 2e-19 Identities = 438/680 (64%), Gaps = 23/680 (3%) Strand=Plus/Plus Query 153127 ACGGTTCAAACGACTCGTTGTTATTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACG 153186 |||| ||||| |||||||||||| || ||||| || || | ||||| ||||| | Sbjct 4852 ACGGCTCAAAAGACTCGTTGTTACCAAGAATTTGAGCAGTAGACGCCGTAGGCATTGGAG 4911 Query 153187 CCACAAGCAACGAATTACGTAATCCGTGTTTTTGTATGTTCATCTTCAATTGTG-ACCAG 153245 | || ||||| ||||| || | ||| ||| |||| | |||| || | | |||| Sbjct 4912 CTACCAGCAAAGAATTGCGCACTCCACACCTTTTAATGT-CGTCTTTAAGAGCGGACCAA 4970 Query 153246 TCCCATAACGAAGTAGGTATCGCATTCCACAAATCGTATTGCAATATCCCTTGGCTAGCT 153305 | ||||| |||||| | || ||||| ||| ||||| | || |||| ||| || Sbjct 4971 TTCCATAGACCAGTAGGCGTTTTATCCCACATATCATATTGAAGGATACCTTTACTAACT 5030 Query 153306 TTGCTACCGGCAAACGTGCTATACGGCTC--ACTGTCAGACGCCAGTTTCAAACTGGCAT 153363 ||||| || | || ||||| | | || | |||| || |||| || | Sbjct 5031 GGACTACCTTCATATGTTTCGTACGGACCGTATAGTTTG--GCCAATTCACAACTAGCTT 5088 Query 153364 CGAGCGCGGCATGATACACAGTTTCGGAAATCTGTTTGTTCAGTAAAACGGCAGCAT--- 153420 | | || | | ||| | ||||| |||| ||||| || ||| ||||||| Sbjct 5089 CTAAGGCACCGTAATATATTGTTTCAAAAATTTGTTTATT---TAAGCGTGCAGCATTTT 5145 Query 153421 CGCTCACGTACGGTATGCGCAACATGACAAATGCATCGGCCAAACCTTGAATGCCAATGC 153480 |||| |||| || |||| | | | ||| || || || ||||| | ||| | | Sbjct 5146 CGCTTTCGTAGGGATAACGCATTAAAATTAGTGCGTCAGCAAATCCTTGGACGCCTAAAC 5205 Query 153481 CTATGGGACGATGGCGCATATTAGAtttt----tttGCAGCTTCAACAGGATAGAAATTG 153536 | || |||||||| || | |||||| ||| ||| | || | || ||| ||||| Sbjct 5206 CAATTGGACGATGACGAAAATTAGACTTTCTGGTTTCCGGC----AATGGGTAGTAATTG 5261 Query 153537 CGGTCGATAATTTTATTTAAACTAATCACGACATGTTTCACCACAGAATGCAACAGTTGA 153596 ||||| ||||| || | | | | | | | || | || | | ||| Sbjct 5262 ATATCGATTATTTTGTTGAGATTCCTTGTTATAAGCTTTGCAACTTCTTTGAGTTTGTGA 5321 Query 153597 AAATCAAACGTTCCATTAAT-GATAT--ATTTGTTGACGGCAATCGACGCCAAGTTGCAA 153653 |||||| | | ||| | | || | | || | ||||| || |||| |||||| Sbjct 5322 AAATCATATTGTTTATTTGTCGTTACGAACATATTCAACGCAATTGATGCCAGATTGCAA 5381 Query 153654 ACGGCAGTTTCGTCGGGGGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTT 153713 || || |||| || | | ||||| || ||||| | ||| || || ||||||||| Sbjct 5382 ACTGCTATTTCTTCAGCCGACGTATATTCGACGATTTCTGTACATAAGTTACTGCATTTT 5441 Query 153714 ATCAGGCCGCAATTACTTTGATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGTAT 153773 || ||| ||| |||||| ||||||||||| |||||||| ||||| |||||||| Sbjct 5442 ATAGTGCCAACATTCTGTTGATTACTTTTGCGGTTGCAAGCGTCTTTGTAAAGCATGTAA 5501 Query 153774 GGTGTGCCGGTTTCGGCTTG 153793 || || |||||||| |||| Sbjct 5502 GGAGTTCCGGTTTCTACTTG 5521 >seq11312 Length=46762 Score = 98.7 bits (108), Expect = 1e-15 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || ||||| | || ||||| ||||| ||||| || ||| Sbjct 38383 GCCACCACGGAGACGGAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTGTAGTCGGA 38324 Query 139597 CATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 | |||| || | ||||| | || || ||||| | |||| |||||| ||||| |||| Sbjct 38323 TAACGTGCGTCCA-TCTTCCAATTGCTTGCCAGCGAAAATCAAACGTTGTTGATCTGGAG 38265 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 | ||||||||||| || ||| |||| | || | | ||| | ||||||| ||||| Sbjct 38264 GAATGCCTTCTTTATC-CTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCA 38206 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || | || | || ||||| || | ||||| ||||| |||||||| Sbjct 38205 ACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCAT 38156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495914740543200