Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq9454 235 5e-57 >seq9454 Length=16677 Score = 235 bits (260), Expect = 5e-57 Identities = 480/708 (68%), Gaps = 10/708 (1%) Strand=Plus/Minus Query 13691 TTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCAT 13750 ||||||||| || | ||| |||| | | || ||||||| | |||| |||| ||||| Sbjct 13720 TTCTAATAGCAAACGATCGGCAACATATTCTATATATTTACACATACTTTCACTGTTCAT 13661 Query 13751 ACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTC 13810 || |||| | || || | | || ||||| |||||||| || || || || Sbjct 13660 GCCAATTAAGTCGACTGGTAAGGCTTCTGTCAAAAACTCTTTTTCAATTTTTACGGCATC 13601 Query 13811 TTTTATAATAATTGTAATAATC---TCATTAGAAGGAGGATATTTTAGATGTTTAAAAAT 13867 |||| || || || |||| || ||| || | | ||| ||||||||| || Sbjct 13600 AGTTATTAT--TTCCAA-AATCCGTTCTTTACTCGGTTTTTGTATTAAATGTTTAAACAT 13544 Query 13868 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 13927 || |||||| ||||| || | ||| ||||| | || | ||| || || ||||| Sbjct 13543 TAGTACCGCAAATTCACAGTGCAAGCCTTCATCACGTGATATCATTTCATTAGAGAATGT 13484 Query 13928 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAA 13987 ||| |||||||| | ||| ||||| |||| ||||||||| | ||| || || ||| Sbjct 13483 TAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGAAGCGAAGCTGCCACTAAA 13424 Query 13988 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTT 14047 ||| || || || || ||||| || ||||| | || || ||||| || | Sbjct 13423 GAAAATACCTTCGACAGCAGCGAAAGCTATGATACGCTCGCCAAAATTAGCCGAATGCGA 13364 Query 14048 CGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGC 14107 ||||||||| | ||||||||| | || || |||| || |||||| ||||| || Sbjct 13363 TGATATCCATGCTAGAGCCCATTCGGCCTTCTTCTTAACCAATGGCATTGTCTCAATGGC 13304 Query 14108 ATTAAATAAATATTCC--TTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA 14165 |||||| | |||||| |||| | | | | ||| || |||| || ||||||| ||| Sbjct 13303 ATTAAAGAGATATTCACGTTCTTTCTCATCCATGATAT--ATGTTTCGATAAGTAGACTA 13246 Query 14166 TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCC 14225 |||||||| || || | |||||||| || || |||||||| |||||||| | |||||| Sbjct 13245 TACATTTCCGAATGCACATTTTCCATGGCAATTTGAAAACCGTAAAAGCAACGAGCTTCA 13186 Query 14226 GACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTA 14285 | ||| || || | |||||| ||| | ||||| |||||||| |||||||| Sbjct 13185 GTTATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGGAT 13126 Query 14286 GCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTC 14345 || |||||||| ||||| | | | |||||| | | || | | | | ||| Sbjct 13125 GCCGCAAAAAAAGCCAAAACATGTGAAATAAAATGCCGTTCGCCGTCACTTAACCGATTC 13066 Query 14346 CAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAA 14393 |||||| | || ||||| || || || || ||| | ||||||||| Sbjct 13065 CAATCGTCCATGTCTTTAGAGAGGTCAACCTCTTCAGCAGTCCAAAAA 13018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479583655841400