Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq9454 224 9e-54 >seq9454 Length=16677 Score = 224 bits (248), Expect = 9e-54 Identities = 474/705 (67%), Gaps = 4/705 (1%) Strand=Plus/Minus Query 13479 TTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCAT 13538 |||||||| || | ||| |||| | | || ||||||| | |||| |||| ||||| Sbjct 13720 TTCTAATAGCAAACGATCGGCAACATATTCTATATATTTACACATACTTTCACTGTTCAT 13661 Query 13539 ACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTC 13598 || |||| | || || | | || ||||| |||||||| || || || || Sbjct 13660 GCCAATTAAGTCGACTGGTAAGGCTTCTGTCAAAAACTCTTTTTCAATTTTTACGGCATC 13601 Query 13599 GTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAA 13658 |||| || | ||| || ||| || | | ||| ||||||||| |||| Sbjct 13600 AGTTATTATTTCCAAAATCCGTTCTTTACTCGGTTTTTGTATTAAATGTTTAAACATTAG 13541 Query 13659 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13718 |||||| ||||| || | ||| ||||| | || | ||| || || |||||||| Sbjct 13540 TACCGCAAATTCACAGTGCAAGCCTTCATCACGTGATATCATTTCATTAGAGAATGTTAA 13481 Query 13719 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 13778 |||||||| | ||| ||||| |||| ||||||||| | |||||| || |||||| Sbjct 13480 ACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGAAGCGAAGCTGCCACTAAAGAA 13421 Query 13779 TATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGA 13838 || || || || ||||| || ||||| | || || ||||| || | ||| Sbjct 13420 AATACCTTCGACAGCAGCGAAAGCTATGATACGCTCGCCAAAATTAGCCGAATGCGATGA 13361 Query 13839 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATT 13898 ||||||| | ||||||||| | || || |||| || |||||| || || ||||| Sbjct 13360 TATCCATGCTAGAGCCCATTCGGCCTTCTTCTTAACCAATGGCATTGTCTCAATGGCATT 13301 Query 13899 GAATAAATGTTCC--TTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 13956 || | || ||| |||| | | | | ||| || |||| || ||||||| |||||| Sbjct 13300 AAAGAGATATTCACGTTCTTTCTCATCCATGATAT--ATGTTTCGATAAGTAGACTATAC 13243 Query 13957 ATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGAC 14016 ||||| || || | ||||| || || || |||||||| ||||| || | |||||| | Sbjct 13242 ATTTCCGAATGCACATTTTCCATGGCAATTTGAAAACCGTAAAAGCAACGAGCTTCAGTT 13183 Query 14017 CATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCT 14076 ||| ||||| | |||||| ||| | || || ||||||||||||||||| || Sbjct 13182 ATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGGATGCC 13123 Query 14077 GCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAA 14136 |||||||| ||||| | | | |||||| | | || | | | | |||||| Sbjct 13122 GCAAAAAAAGCCAAAACATGTGAAATAAAATGCCGTTCGCCGTCACTTAACCGATTCCAA 13063 Query 14137 TCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAA 14181 ||| | | || ||||| || || || || ||| | ||||||||| Sbjct 13062 TCGTCCATGTCTTTAGAGAGGTCAACCTCTTCAGCAGTCCAAAAA 13018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478444798612440