Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq11312 123 2e-23 seq4549 113 3e-20 seq23389 102 6e-17 seq4550 100 2e-16 >seq11312 Length=46762 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || | | ||||| || | || ||||||||| | ||||| ||||| Sbjct 38383 GCCACCACGGAGACGGAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTGTAGTCGGA 38324 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || || ||| | || |||||||| ||||| || |||||||| || |||||||| | || Sbjct 38323 TAACGTGCGTCCATCTTCCAATTGCTTGCCAGCGAAAATCAAACGTTGTTGATCTGGAGG 38264 Query 43002 CACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | |||||||| || |||| | | ||||| | ||| |||||| || ||| | Sbjct 38263 AATGCCTTCTTTATC-CTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAA 38205 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 | || | || |||||||| || || |||||||| || |||||||||||||| Sbjct 38204 CTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCATTTT 38153 >seq4549 Length=20005 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || ||||| | || |||||||| | || ||||||||| | |||||||| || Sbjct 19933 CCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTTTGAATGTTGTAATCAGAT 19874 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| |||| |||||||| ||||| ||||||||||| || || ||||| | || Sbjct 19873 AGGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGA 19814 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || || | ||||| | ||| |||||| || |||||| Sbjct 19813 ATACCTTCCTTGTCTTGAATTTTAGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCGACT 19754 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || || || || || | ||||| || ||||||||||| Sbjct 19753 TCTAGGGTGATGGTCTTGCCAGTCAATGTTTTGACGAAAATTTGCAT 19707 Score = 100 bits (110), Expect = 2e-16 Identities = 164/235 (70%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || || || | || |||||||| | || |||||| || | ||||||||| ||| Sbjct 19705 CCACCGCGTAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCAGAC 19646 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || ||| |||| |||||||| ||||| ||||||||||| || || ||||| | || Sbjct 19645 AAGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGA 19586 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || || | || || | | | || || | || || Sbjct 19585 ATACCTTCCTTGTCTTGAATTTTAGCCTTAACATTTTCGATAGTATCCGATGGTTCAACT 19526 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTTAA 43117 || | || |||||||| || |||| ||||| ||||| ||||||||||| |||| Sbjct 19525 TCCAAAGTAATAGTTTTGCCAGTTAATGTTTTTACAAAGATTTGCATTTT-TTAA 19472 >seq23389 Length=58516 Score = 102 bits (112), Expect = 6e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || ||||| | ||| |||||||||||||| || | || |||||||| || || || ||| Sbjct 44438 TCTTTTTGAATATTATAATCGGACAATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAA 44497 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCT 43037 ||||||||||| || |||| || | || ||||| || ||| ||| |||| || | Sbjct 44498 ATCAATCGCTGCTGGTCGGGTGGAATTCCCTCTTTGTC-CTGAATCTTGGCTTTTACATT 44556 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| ||||| | ||||| || | || || || || || ||||| ||||| || Sbjct 44557 TTCAATAGTGTCCGAGGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTAC 44616 Query 43098 AAAAATTTGCATTTT 43112 |||||| ||||| || Sbjct 44617 AAAAATCTGCATATT 44631 >seq4550 Length=29190 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957 ||||||||||| | ||| |||||||| | |||||||| |||||||| || | || Sbjct 5727 AACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGCCCATCT 5668 Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017 ||||| |||||||| ||||| ||||| ||||| || || | || | |||||| || || Sbjct 5667 TCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCC 5608 Query 43018 CTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTT 43077 ||| |||| || | | | ||||| | || || || | || || ||| Sbjct 5607 TGGATTTTTGCTTTAACGTTTTCGATAGTGTCCGACGGTTCCACCTCCAAAGTAATCGTT 5548 Query 43078 TTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || || || | |||||| ||||| ||||||||| Sbjct 5547 TTCCCAGTCAAAGTTTTAACAAATATTTGCATT 5515 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||||| | ||| |||||||||| || || || || | ||||| ||||| Sbjct 5286 CCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGGAG 5227 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| || | | ||||| |||||||| ||||| ||||| ||||||||||| | || Sbjct 5226 AGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGTTGATCTGGTGGG 5167 Query 43003 ACACCTTCTTTTTCGCTGA--TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 || |||||||| || ||| | | | ||| || | ||| || ||| | ||| | Sbjct 5166 ACTCCTTCTTTATC-TTGAATTTTAGT-TTTAACATTCTCAATAGTATCGGATGGCTCAA 5109 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 | || | || |||||||| || || | || ||||| || || |||||||| Sbjct 5108 CCTCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCATTTT 5057 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | ||||||||||| | ||| |||||||| | |||||||| ||| Sbjct 5514 CCACCACGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCCGAC 5455 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 ||||| || | || ||||| || || || ||||| ||||| ||||| || || | || Sbjct 5454 AATGTGCGCCCATCTTCCAACTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 5395 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || ||| |||| || | | | || || | || || Sbjct 5394 ATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGATTCTACC 5335 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||| ||||| | ||| || ||||| |||||||| Sbjct 5334 TCCAAAGTGATGGTTTTGCCGGTCAAAGTCTTAACAAATATTTGCAT 5288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381257719388118