Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq4550 161 1e-34 seq15038 129 6e-25 seq23389 127 2e-24 seq4549 123 3e-23 seq11312 104 2e-17 seq181 82.4 8e-11 >seq4550 Length=29190 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | |||||| || || |||| |||||||| ||||||||||||||||| | Sbjct 5970 CCTCCGCGGAGACGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCCGAC 5911 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| | ||||| | ||||| |||||| |||||| ||| ||||| || ||||| Sbjct 5910 AATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 5851 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| |||||| ||| | | ||| | ||||||| ||||| ||| Sbjct 5850 ATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCCGACGGTTCCACT 5791 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||| || || ||||| ||||| || ||||||||||| Sbjct 5790 TCCAAAGTGATCGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 5744 Score = 152 bits (168), Expect = 5e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | |||||| || ||||| | ||| ||||| ||||||||||||||||| | Sbjct 5742 CCACCGCGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCCGAC 5683 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| | ||||| | ||||| |||||| |||||| ||| ||||| || ||||| Sbjct 5682 AATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 5623 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| |||||| ||| | | ||| | ||||||| ||||| || Sbjct 5622 ATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCCGACGGTTCCACC 5563 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||| || || ||||| ||||| || ||||||||||| Sbjct 5562 TCCAAAGTAATCGTTTTCCCAGTCAAAGTTTTAACAAATATTTGCAT 5516 Score = 145 bits (160), Expect = 8e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | |||||| || ||||| | ||| ||||| ||||||||||||||||| | Sbjct 5514 CCACCACGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCCGAC 5455 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| | ||||| | || || |||||| |||||| ||| ||||| || ||||| Sbjct 5454 AATGTGCGCCCATCTTCCAACTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 5395 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| |||||| ||| | | ||| | || |||| | |||||| Sbjct 5394 ATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGATTCTACC 5335 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | || ||||||||||| || || || |||||||||||| Sbjct 5334 TCCAAAGTGATGGTTTTGCCGGTCAAAGTCTTAACAAATATTTGCATA 5287 >seq15038 Length=36294 Score = 129 bits (142), Expect = 6e-25 Identities = 438/676 (65%), Gaps = 15/676 (2%) Strand=Plus/Plus Query 156549 ACGGTTCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACG 156608 |||| ||||| ||||||||||| || ||||| || || | ||||| ||||| | Sbjct 4852 ACGGCTCAAAAGACTCGTTGTTACCAAGAATTTGAGCAGTAGACGCCGTAGGCATTGGAG 4911 Query 156609 CCACAAGCAATGAATTACGTAATCCGTATTTTTGTATATTTATTTTCAACTGTGACCAGT 156668 | || ||||| ||||| || | ||| | ||| || | ||| | ||||| | Sbjct 4912 CTACCAGCAAAGAATTGCGCACTCCACACCTTTTAATGTCGTCTTTAAGAGCGGACCAAT 4971 Query 156669 CCCATAACGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTT 156728 ||||| ||| || ||| ||||| ||| ||||| | || |||| || || Sbjct 4972 TCCATAGACCAGTAGGCGTTTTATCCCACATATCATATTGAAGGATACCTTTACTAACTG 5031 Query 156729 TGCTACCGGCAAACGTGCTATAAGGCTCACTAACAGAT--GCCAGTTCGTAACTGGCCTC 156786 ||||| || | || || || | | || | |||| ||| |||| || || Sbjct 5032 GACTACCTTCATATGTTTCGTACGGACCGT--ATAGTTTGGCCAATTCACAACTAGCTTC 5089 Query 156787 GAGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCT 156846 | ||| | | ||| | |||||| |||||||||||| || | | ||| ||||| Sbjct 5090 TAAGGCACCGTAATATATTGTTTCAAAAATTTGTTTATTTAAGCGTGCAGCATTTTCGCT 5149 Query 156847 CACGTACGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCAATGCCGAT 156906 |||| || |||| | || | ||| || || || ||||| | ||| | || || Sbjct 5150 TTCGTAGGGATAACGCATTAAAATTAGTGCGTCAGCAAATCCTTGGACGCCTAAACCAAT 5209 Query 156907 GGGACGATGGCGCATATTAGAtttttttGCAGTTTC----AATAGGGTAGAAATTGCGAT 156962 |||||||| || | |||||| ||| | | |||| ||| |||||| ||||| || Sbjct 5210 TGGACGATGACGAAAATTAGACTTTCTGG---TTTCCGGCAAT-GGGTAGTAATTGATAT 5265 Query 156963 CAATAATTTTATTCAAACTATCCACTACATGTTTGACCACAGTGTGCAATAGTTGAAAAT 157022 | || ||||| || | | | || | | || | || | | | ||||||| Sbjct 5266 CGATTATTTTGTTGAGATTCCTTGTTATAAGCTTTGCAACTTCTTTGAGTTTGTGAAAAT 5325 Query 157023 CAAAA-GTATCATTATTGATAT--ATTTATTGACGGCAATCGACGCTAGATTACATACGG 157079 || | || | || | | || | |||| | ||||| || || ||||| || || | Sbjct 5326 CATATTGTTTATTTGTCGTTACGAACATATTCAACGCAATTGATGCCAGATTGCAAACTG 5385 Query 157080 CAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCA 157139 | |||| || | || ||||| || ||||| | ||| || || ||||||||||| Sbjct 5386 CTATTTCTTCAGCCGACGTATATTCGACGATTTCTGTACATAAGTTACTGCATTTTATAG 5445 Query 157140 ATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTG 157199 || ||| |||||| |||||||||||||||||||| ||||| | |||||| || | Sbjct 5446 TGCCAACATTCTGTTGATTACTTTTGCGGTTGCAAGCGTCTTTGTAAAGCATGTAAGGAG 5505 Query 157200 TGCCGGTTTCGGCTTG 157215 | |||||||| |||| Sbjct 5506 TTCCGGTTTCTACTTG 5521 >seq23389 Length=58516 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||| ||||||| || | ||| | || ||||||||||| || || |||||| | Sbjct 44402 CCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 44461 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| ||||| | ||| || ||||| | |||| || ||||| ||||| || Sbjct 44462 AATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGCTGCTGGTCGGGTGGA 44521 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || |||||||| ||| || ||||| | ||| | ||||||| |||||| || Sbjct 44522 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCAATAGTGTCCGAGGGTTCGACC 44581 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| ||| | |||||||| || | |||||||| || || |||||| Sbjct 44582 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATA 44629 >seq4549 Length=20005 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || ||||| | ||| || || ||||| ||||||||||| Sbjct 19933 CCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTTTGAATGTTGTAATCAGAT 19874 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| |||||| | ||| || |||||| | |||| |||||||||||| || || Sbjct 19873 AGGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGA 19814 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| |||||| || | | ||| | ||||| | || || ||| Sbjct 19813 ATACCTTCCTTGTCTTGAATTTTAGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCGACT 19754 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | |||||||| ||||||||||| ||||| ||||||||| Sbjct 19753 TCTAGGGTGATGGTCTTGCCAGTCAATGTTTTGACGAAAATTTGCATA 19706 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || |||| ||| | || ||||| | ||| || || || || || |||||||| | Sbjct 19705 CCACCGCGTAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCAGAC 19646 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| |||||| | ||| || |||||| | |||| |||||||||||| || || Sbjct 19645 AAGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGA 19586 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| |||||| || | | ||| | || |||| ||||| ||| Sbjct 19585 ATACCTTCCTTGTCTTGAATTTTAGCCTTAACATTTTCGATAGTATCCGATGGTTCAACT 19526 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | || ||||| || ||||||||||| || |||||||| Sbjct 19525 TCCAAAGTAATAGTTTTGCCAGTTAATGTTTTTACAAAGATTTGCAT 19479 >seq11312 Length=46762 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||| | || || || | || || || |||||||||||||| ||| Sbjct 38383 GCCACCACGGAGACGGAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTGTAGTCGGA 38324 Query 143017 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | |||| || | ||||| | ||| || ||||| | |||| |||||| ||||| |||| Sbjct 38323 TAACGTGCGTCCA-TCTTCCAATTGCTTGCCAGCGAAAATCAAACGTTGTTGATCTGGAG 38265 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | ||||||||||| || |||||| || | | ||| | ||||| | || || | Sbjct 38264 GAATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAA 38205 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| | ||| | || ||||| || | ||||| ||||| |||||||| Sbjct 38204 CTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCAT 38156 >seq181 Length=60274 Score = 82.4 bits (90), Expect = 8e-11 Identities = 150/220 (68%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 142965 GTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC 143024 ||||||| ||||| ||||| | || || | ||||||||||| || || | | ||||| Sbjct 37561 GTAAACGTAAAACCAAATGGAGAGTCGAGCCCTTTTGTATGTTATAGTCCATTAATGTGC 37620 Query 143025 TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTT 143084 ||||| || || || || || || |||| ||| | |||| || || ||||| | Sbjct 37621 AACCATCTTCCAGCTGCTTGCCGGCGTAAATCAAACGACGTTGATTTGGTGGGATGCCGT 37680 Query 143085 CTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAG 143144 |||| | ||| || ||| | | ||| | || || || ||||| || || | || Sbjct 37681 CTTTATTCCGAATCTTGGTTTTAATCGTTTCAATAGTATCGGTCGGTTCGACATCTAAAG 37740 Query 143145 TCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | | || || || || || ||||| ||||| || ||||| Sbjct 37741 TGATGGTATTTCCCGTTAACGTTTTCACGAAAATCTGCAT 37780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506861845704720