Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq4837 134 2e-26 seq9454 131 2e-25 >seq4837 Length=103144 Score = 134 bits (148), Expect = 2e-26 Identities = 412/633 (65%), Gaps = 12/633 (2%) Strand=Plus/Plus Query 70001 CACATTTGGAGCGGCAACAGTAGTCGAAGCGTTTTGGATTCGCTCGGCTTCACCGACAGA 70060 ||||| |||| || ||| ||| || |||||||| ||| |||| || | Sbjct 5717 CACATCTGGAATGGTAACGCTAGCCGCGAATTTTTGGATAGATGCGGGTTCAGTGATCGC 5776 Query 70061 CAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTAT 70120 |||| ||||| |||||||| | ||||| || || ||| | || | || | || ||| Sbjct 5777 GAAGAAGGCGACTTGGGGCCAATTTACGGTTTTCAATGGCGCCATTTTGGGGCAAAATAT 5836 Query 70121 GTAGACT----GCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCAT 70176 ||| |||| || | | ||| |||| || ||||||||| || || || Sbjct 5837 CGC-ACTTGTCGCGATACTTATGGTACGG---AGGGAGTCGATCAATTGAAGCAGATAAT 5892 Query 70177 TGACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGC 70236 | || | | || ||||| || ||| | | || | ||| ||| |||||||| | Sbjct 5893 TAGGACAATAACTACAAATCCTACTGATCGACGTATGATTTTGTCCTCTTGGAATCCAGT 5952 Query 70237 AGATTTGCACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTA--C 70294 |||| | | ||||||| ||||||| || || || ||||| ||||| || ||| | Sbjct 5953 AGATATACCAAAAATGGCCTTACCACCCTGCCATTGCTTGGCCCAGTTCTAT--GTAGCC 6010 Query 70295 GATGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCC 70354 || | ||||||| | | |||||| | |||||||||||||| || ||||| || Sbjct 6011 AATAATGAGCTGTCATGTCAACTTTATCAGCGCAGTGCCGACATGGGGCTGGGTGTCCCA 6070 Query 70355 TTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAA 70414 ||||| || ||| ||| | | || || |||||||| || | |||||||| ||| Sbjct 6071 TTTAATATAGCATCGTATGCATTATTAACCTCTATGATTGCACATTTAACCGGCCTTAAA 6130 Query 70415 GCGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCA 70474 | ||| || |||||||| | ||||| | ||| | ||| || || ||| | ||| Sbjct 6131 CCAGGCGATTTTGTACACACTACCGGCGATACGCACATTTATAAAACGCATATCCAACCA 6190 Query 70475 TTAAAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGTAAA 70534 || || | |||| | ||| | ||| | ||||| || || | ||| Sbjct 6191 TTGAAAGAGCAATTAACACGCAAACCGCATGCATTTCCTAAATTGATAATAAAACGTGCC 6250 Query 70535 GTTGAAAATATTGACAGTTTTAAGTACGAAGATTTTATAATAAAAGGTTACGATCCATAC 70594 || ||||||||||| ||| |||||| ||||| ||| | ||| |||| || Sbjct 6251 GTAGAAAATATTGAGGATTTCAAGTACTCTGATTTCGAAATTGTGGATTATAATCCTTAT 6310 Query 70595 CCTAAGATTCCCATGGTTCTGGCTGTTTAGAGA 70627 || || |||| |||| |||||||||||||| Sbjct 6311 CCAAAAATTCAAATGGAAATGGCTGTTTAGAGA 6343 >seq9454 Length=16677 Score = 131 bits (144), Expect = 2e-25 Identities = 472/726 (65%), Gaps = 32/726 (4%) Strand=Plus/Plus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097 |||| | ||||| |||||||| | |||||||| || || || || ||| || |||||| Sbjct 13005 AGGCGGAAGCCTCTTTTTGGACTGCTGAAGAGGTTGACCTCTCTAAAGACATGGACGATT 13064 Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTG 125157 || | ||| || | ||| || || | ||||| || || ||||||| || |||| Sbjct 13065 GGAA---TCGGTTAAGTGACGGCGAACGGCATTTTATTTCACATGTTTTGGCTTTTTTTG 13121 Query 125158 CCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCA 125217 | | |||||||| || || || || ||| | || |||||| || |||||| | | Sbjct 13122 CGGCATCCGATGGTATTGTTAATGAGAATTTAGTGGAACGATTTTCCCAAGAGGTTCAAA 13181 Query 125218 TTCCAGAGGTGTCGT-GCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAA 125276 | | || | |||| |||||||||| || ||||| || || || ||||| |||||| Sbjct 13182 TAACTGAAGC-TCGTTGCTTTTACGGTTTTCAAATTGCCATGGAAAATGTGCATTCGGAA 13240 Query 125277 ATGTACTCTACACTGATTG--ACATGTA-CATTCGCGATCCGCAACGTAAACACATGCTC 125333 ||||| | ||| || | |||| || ||| || ||||| || | ||| Sbjct 13241 ATGTATAGTCTACTTATCGAAACATATATCATGGATGAGAAAGAACGTGAATA---TCTC 13297 Query 125334 TTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGG 125393 ||||| || || || || |||| | | || ||||| |||||| | ||| Sbjct 13298 TTTAATGCCATTGAGACAATGCCATTGGTTAAGAAGAAGGCCGAATGGGCTCTAGCATGG 13357 Query 125394 ATCGATGA-CG-ACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGG 125451 || || | || | | || | | ||| | | | || ||||| || || || | Sbjct 13358 AT--ATCATCGCATTCGGCTAATTTTGGCGAGCGTATCATAGCTTTCGCTGCTGTCGAAG 13415 Query 125452 GCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGC 125511 | || |||||| || || || || | || |||||||| ||||| || ||| | |||| Sbjct 13416 GTATTTTCTTTAGTGGCAGCTTCGCTTCGATATTTTGGCTAAAGAAACGTGGAATAATGC 13475 Query 125512 CCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTG 125571 | || | || | ||| || | ||||| || || || ||| | |||||||| |||| Sbjct 13476 CAGGTTTAACATTCTCTAATGAAATGATATCACGTGATGAAGGCTTGCACTGTGAATTTG 13535 Query 125572 CCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGC--AGATCCAGCGATGAAAAGGT 125629 | | ||| ||||| || || | | | | | | | || | ||| | | Sbjct 13536 CGGTACTAATGTTT---AAACATTT--------AATACAAAAACCGAGTAAAGAACGGAT 13584 Query 125630 CATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACC 125689 | | || |||| |||||||| | || ||| |||||||| | || ||| || |||| Sbjct 13585 TTTGGAAATAATAACTGATGCCGTAAAAATTGAAAAAGAGTTTTTGACAGAAGCCTTACC 13644 Query 125690 GGTCAGCATGATTGGCATGAAC--TGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCA 125747 ||| | | |||||||||||| || ||| ||||| | || ||||| | ||| || Sbjct 13645 AGTCGACTTAATTGGCATGAACAGTGAAAG--TATGTGTAAATATATAGAATATGTTGCC 13702 Query 125748 GATCGT 125753 |||||| Sbjct 13703 GATCGT 13708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740836224549960