Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020
14-03-12] 24,071 sequences; 363,107,242 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq4837 134 2e-26
seq9454 131 2e-25
>seq4837
Length=103144
Score = 134 bits (148), Expect = 2e-26
Identities = 412/633 (65%), Gaps = 12/633 (2%)
Strand=Plus/Plus
Query 70001 CACATTTGGAGCGGCAACAGTAGTCGAAGCGTTTTGGATTCGCTCGGCTTCACCGACAGA 70060
||||| |||| || ||| ||| || |||||||| ||| |||| || |
Sbjct 5717 CACATCTGGAATGGTAACGCTAGCCGCGAATTTTTGGATAGATGCGGGTTCAGTGATCGC 5776
Query 70061 CAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTAT 70120
|||| ||||| |||||||| | ||||| || || ||| | || | || | || |||
Sbjct 5777 GAAGAAGGCGACTTGGGGCCAATTTACGGTTTTCAATGGCGCCATTTTGGGGCAAAATAT 5836
Query 70121 GTAGACT----GCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCAT 70176
||| |||| || | | ||| |||| || ||||||||| || || ||
Sbjct 5837 CGC-ACTTGTCGCGATACTTATGGTACGG---AGGGAGTCGATCAATTGAAGCAGATAAT 5892
Query 70177 TGACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGC 70236
| || | | || ||||| || ||| | | || | ||| ||| |||||||| |
Sbjct 5893 TAGGACAATAACTACAAATCCTACTGATCGACGTATGATTTTGTCCTCTTGGAATCCAGT 5952
Query 70237 AGATTTGCACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTA--C 70294
|||| | | ||||||| ||||||| || || || ||||| ||||| || ||| |
Sbjct 5953 AGATATACCAAAAATGGCCTTACCACCCTGCCATTGCTTGGCCCAGTTCTAT--GTAGCC 6010
Query 70295 GATGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCC 70354
|| | ||||||| | | |||||| | |||||||||||||| || ||||| ||
Sbjct 6011 AATAATGAGCTGTCATGTCAACTTTATCAGCGCAGTGCCGACATGGGGCTGGGTGTCCCA 6070
Query 70355 TTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAA 70414
||||| || ||| ||| | | || || |||||||| || | |||||||| |||
Sbjct 6071 TTTAATATAGCATCGTATGCATTATTAACCTCTATGATTGCACATTTAACCGGCCTTAAA 6130
Query 70415 GCGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCA 70474
| ||| || |||||||| | ||||| | ||| | ||| || || ||| | |||
Sbjct 6131 CCAGGCGATTTTGTACACACTACCGGCGATACGCACATTTATAAAACGCATATCCAACCA 6190
Query 70475 TTAAAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGTAAA 70534
|| || | |||| | ||| | ||| | ||||| || || | |||
Sbjct 6191 TTGAAAGAGCAATTAACACGCAAACCGCATGCATTTCCTAAATTGATAATAAAACGTGCC 6250
Query 70535 GTTGAAAATATTGACAGTTTTAAGTACGAAGATTTTATAATAAAAGGTTACGATCCATAC 70594
|| ||||||||||| ||| |||||| ||||| ||| | ||| |||| ||
Sbjct 6251 GTAGAAAATATTGAGGATTTCAAGTACTCTGATTTCGAAATTGTGGATTATAATCCTTAT 6310
Query 70595 CCTAAGATTCCCATGGTTCTGGCTGTTTAGAGA 70627
|| || |||| |||| ||||||||||||||
Sbjct 6311 CCAAAAATTCAAATGGAAATGGCTGTTTAGAGA 6343
>seq9454
Length=16677
Score = 131 bits (144), Expect = 2e-25
Identities = 472/726 (65%), Gaps = 32/726 (4%)
Strand=Plus/Plus
Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097
|||| | ||||| |||||||| | |||||||| || || || || ||| || ||||||
Sbjct 13005 AGGCGGAAGCCTCTTTTTGGACTGCTGAAGAGGTTGACCTCTCTAAAGACATGGACGATT 13064
Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTG 125157
|| | ||| || | ||| || || | ||||| || || ||||||| || ||||
Sbjct 13065 GGAA---TCGGTTAAGTGACGGCGAACGGCATTTTATTTCACATGTTTTGGCTTTTTTTG 13121
Query 125158 CCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCA 125217
| | |||||||| || || || || ||| | || |||||| || |||||| | |
Sbjct 13122 CGGCATCCGATGGTATTGTTAATGAGAATTTAGTGGAACGATTTTCCCAAGAGGTTCAAA 13181
Query 125218 TTCCAGAGGTGTCGT-GCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAA 125276
| | || | |||| |||||||||| || ||||| || || || ||||| ||||||
Sbjct 13182 TAACTGAAGC-TCGTTGCTTTTACGGTTTTCAAATTGCCATGGAAAATGTGCATTCGGAA 13240
Query 125277 ATGTACTCTACACTGATTG--ACATGTA-CATTCGCGATCCGCAACGTAAACACATGCTC 125333
||||| | ||| || | |||| || ||| || ||||| || | |||
Sbjct 13241 ATGTATAGTCTACTTATCGAAACATATATCATGGATGAGAAAGAACGTGAATA---TCTC 13297
Query 125334 TTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGG 125393
||||| || || || || |||| | | || ||||| |||||| | |||
Sbjct 13298 TTTAATGCCATTGAGACAATGCCATTGGTTAAGAAGAAGGCCGAATGGGCTCTAGCATGG 13357
Query 125394 ATCGATGA-CG-ACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGG 125451
|| || | || | | || | | ||| | | | || ||||| || || || |
Sbjct 13358 AT--ATCATCGCATTCGGCTAATTTTGGCGAGCGTATCATAGCTTTCGCTGCTGTCGAAG 13415
Query 125452 GCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGC 125511
| || |||||| || || || || | || |||||||| ||||| || ||| | ||||
Sbjct 13416 GTATTTTCTTTAGTGGCAGCTTCGCTTCGATATTTTGGCTAAAGAAACGTGGAATAATGC 13475
Query 125512 CCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTG 125571
| || | || | ||| || | ||||| || || || ||| | |||||||| ||||
Sbjct 13476 CAGGTTTAACATTCTCTAATGAAATGATATCACGTGATGAAGGCTTGCACTGTGAATTTG 13535
Query 125572 CCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGC--AGATCCAGCGATGAAAAGGT 125629
| | ||| ||||| || || | | | | | | | || | ||| | |
Sbjct 13536 CGGTACTAATGTTT---AAACATTT--------AATACAAAAACCGAGTAAAGAACGGAT 13584
Query 125630 CATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACC 125689
| | || |||| |||||||| | || ||| |||||||| | || ||| || ||||
Sbjct 13585 TTTGGAAATAATAACTGATGCCGTAAAAATTGAAAAAGAGTTTTTGACAGAAGCCTTACC 13644
Query 125690 GGTCAGCATGATTGGCATGAAC--TGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCA 125747
||| | | |||||||||||| || ||| ||||| | || ||||| | ||| ||
Sbjct 13645 AGTCGACTTAATTGGCATGAACAGTGAAAG--TATGTGTAAATATATAGAATATGTTGCC 13702
Query 125748 GATCGT 125753
||||||
Sbjct 13703 GATCGT 13708
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740836224549960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |