Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq11312 136 3e-27 seq23389 125 5e-24 seq4549 123 2e-23 seq4550 113 3e-20 seq181 104 2e-17 seq1380 98.7 7e-16 >seq11312 Length=46762 Score = 136 bits (150), Expect = 3e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || | ||| || || |||||||||||||| ||| || | | | ||||| Sbjct 38364 ACCAAGTGCAAGGTCGACTCCTTTTGTATGTTGTAGTCGGATAACGTGCGTCCATCTTCC 38305 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 ||||| ||||||||| | |||||||||||||| || ||||| |||||||| || | Sbjct 38304 AATTGCTTGCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGA 38245 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| ||| ||| |||| || || ||| | || || || || ||||| ||||| Sbjct 38244 ATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTG 38185 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367 || || |||||||| || ||||||||||| ||| Sbjct 38184 CCAGTAAGAGTTTTAACGAAAATTTGCATTTTT 38152 >seq23389 Length=58516 Score = 125 bits (138), Expect = 5e-24 Identities = 168/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| ||| | | || | ||| | |||||| |||||||| || || |||||| Sbjct 44402 CCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGG-- 44459 Query 15197 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | ||| || | ||||| ||||| || |||||| | ||||| || || |||||| || Sbjct 44460 ACAATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGCTGCTGGTCGGGTG 44519 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 ||||||| |||||||| ||| ||| |||||| |||| || || || ||| | Sbjct 44520 GAATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCAATAGTGTCCGAGGGTTCGA 44579 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 | || | || ||||| || || || || |||||||||||||| |||||||| Sbjct 44580 CCTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 44631 >seq4549 Length=20005 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | || | || || ||||| | || || || ||||| ||||||||||| | Sbjct 19933 CCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTTTGAATGTTGTAATCAGAT 19874 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | ||||||| ||||| |||||||| | ||||||||||| || || ||| Sbjct 19873 AGGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGA 19814 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| |||||| ||| || |||| ||||| ||| | || || Sbjct 19813 ATACCTTCCTTGTCTTGAATTTTAGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCGACT 19754 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||| ||| ||||| || || |||| ||||| || |||||||||||| Sbjct 19753 TCTAGGGTGATGGTCTTGCCAGTCAATGTTTTGACGAAAATTTGCATA 19706 Score = 116 bits (128), Expect = 3e-21 Identities = 128/168 (76%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 15207 CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTT 15266 ||||||| ||||| |||||||| | ||||||||||| || || ||||| ||||| | Sbjct 19635 CGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCT 19576 Query 15267 TGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATT-TTCTACATCTAAGGTA 15325 |||| |||||| ||| ||| |||| || ||||| | || ||| || || || ||| Sbjct 19575 TGTCTTGAATTTTAGCCTTAACATTTTCGATAGTATC-CGATGGTTCAACTTCCAAAGTA 19517 Query 15326 ATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAAT 15373 || ||||| || || | ||||||||||| |||||||| ||| ||||| Sbjct 19516 ATAGTTTTGCCAGTTAATGTTTTTACAAAGATTTGCATTTTTTAAAAT 19469 >seq4550 Length=29190 Score = 113 bits (124), Expect = 3e-20 Identities = 167/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | ||| | |||||| ||||| || || || ||||| || |||||||| ||| Sbjct 5286 CCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGGAG 5227 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | | ||| || ||||||||||| | |||||||| ||||| || ||| Sbjct 5226 AGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGTTGATCTGGTGGG 5167 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 | ||||||||| || |||||| | || ||| | || || |||||| || || Sbjct 5166 ACTCCTTCTTTATCTTGAATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAACC 5107 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAAT 15373 || ||||| || ||||| || |||| || || || || || ||||| || ||||| Sbjct 5106 TCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCATTTTAAAAAAT 5050 Score = 113 bits (124), Expect = 3e-20 Identities = 157/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || ||||| | ||||| || ||||||||||||||||| | | | | | ||| Sbjct 5499 AACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGCCCATCT 5440 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT-C 15270 || || || || ||||| | |||||||| || ||||| ||||| ||||| |||| | Sbjct 5439 TCCAACTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCC 5380 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTAT-TTTCTACATCTAAGGTAATGG 15329 | ||||||| || || |||| || ||||| | || |||||| || || || |||| Sbjct 5379 TGGATTTTTGCT-TTAACGTTTTCGATAGTATC-CGATGATTCTACCTCCAAAGTGATGG 5322 Query 15330 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||| || |||| ||| || ||||| ||||||||| Sbjct 5321 TTTTGCCGGTCAAAGTCTTAACAAATATTTGCATA 5287 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || ||||| | ||||| || ||||||||||||||||| | | | | | ||| Sbjct 5727 AACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGCCCATCT 5668 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT-C 15270 || || ||||||||||| | |||||||| || ||||| ||||| ||||| |||| | Sbjct 5667 TCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCC 5608 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 | ||||||| || || |||| || || || ||| || || || ||||| || Sbjct 5607 TGGATTTTTGCT-TTAACGTTTTCGATAGTGTCCGACGGTTCCACCTCCAAAGTAATCGT 5549 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||| || |||| |||||| ||||| |||||||| Sbjct 5548 TTTCCCAGTCAAAGTTTTAACAAATATTTGCAT 5516 Score = 107 bits (118), Expect = 1e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || ||||| || || || ||||||||||||||||| | | | | | ||| Sbjct 5955 AACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGCCCATCT 5896 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT-C 15270 || || ||||||||||| | |||||||| || ||||| ||||| ||||| |||| | Sbjct 5895 TCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCC 5836 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 | ||||||| || || |||| || || || ||| || || || || || || Sbjct 5835 TGGATTTTTGCT-TTAACGTTTTCGATAGTGTCCGACGGTTCCACTTCCAAAGTGATCGT 5777 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||| || |||| |||||| ||||| |||||||| Sbjct 5776 TTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 5744 >seq181 Length=60274 Score = 104 bits (114), Expect = 2e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 |||||| ||||| || || || | ||||||||||| || || ||| | | | || Sbjct 37568 TAAAACCAAATGGAGAGTCGAGCCCTTTTGTATGTTATAGTCCATTAATGTGCAACCATC 37627 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 ||| | || ||||| ||||| |||||||| |||| | ||| || || ||||| | Sbjct 37628 TTCCAGCTGCTTGCCGGCGTAAATCAAACGACGTTGATTTGGTGGGATGCCGTCTTTATT 37687 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 | ||| ||| | || | |||| || |||||| | ||| |||||||| || ||||| Sbjct 37688 CCGAATCTTGGTTTTAATCGTTTCAATAGTATCGGTCGGTTCGACATCTAAAGTGATGGT 37747 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAA 15372 || || || | ||||| || ||||| ||||| ||| |||| Sbjct 37748 ATTTCCCGTTAACGTTTTCACGAAAATCTGCATTTTTCAAAA 37789 >seq1380 Length=63849 Score = 98.7 bits (108), Expect = 7e-16 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 91627 TTTGCGTTAATATTTCCTAAATCGCCGACGTGTCGTTCAATTGCATTTGGCGCGCCGTGA 91686 |||| | || ||| || ||||| |||| || || ||| | || | || || ||||| Sbjct 31091 TTTGACTCAACATTGCCCAAATCACCGATATGACGCTCATTATCAGTGGGTGCTCCGTGC 31032 Query 91687 TCGTGTCCGGTGGGATTGAAATGCTCACCAGCAGATGTGCAACCGTTAGTTGTGTCGCCG 91746 || | | ||||| |||||| |||| ||||| ||||| |||||||| |||| ||| Sbjct 31031 TCTTTATTGCAAGGATTAAAATGCGCACCGGCAGAAGTGCAGCCGTTAGTATTGTCCCCG 30972 Query 91747 AACTCGTGCACATGAAAACCGTGTAAACCCTT 91778 || ||||| ||||||||||| ||||| ||||| Sbjct 30971 AATTCGTGAACATGAAAACCATGTAATCCCTT 30940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362072949185811