Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq4549 96.9 3e-15 >seq4549 Length=20005 Score = 96.9 bits (106), Expect = 3e-15 Identities = 159/229 (69%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||||| || |||||||| |||||||||||||| | || || |||| ||| Sbjct 19687 ACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCAGACAAGGTGCGTCCGTCTTCC 19628 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 | || || || ||| |||| | | |||||||| ||| | || || ||||| | Sbjct 19627 AATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGA 19568 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 ||||| || || | ||| |||||| || || ||| | ||||| ||||| Sbjct 19567 ATTTTAGCCTTAACATTTTCGATAGTATCCGATGGTTCAACTTCCAAAGTAATAGTTTTG 19508 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATTTT---AAATCTCTTATAAA 19058 || ||||| ||||| ||||| ||||||||||| |||||| | | ||| Sbjct 19507 CCAGTTAATGTTTTTACAAAGATTTGCATTTTTTAAAATCTGTCAAAAA 19459 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || |||| | || |||| ||||| || |||||||||||||| |||||||| | Sbjct 19933 CCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTTTGAATGTTGTAATCAGAT 19874 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || |||| |||| || || || ||| |||| | | |||||||| ||| Sbjct 19873 AGGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGA 19814 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || || ||||| |||||| || || | | | || ||| |||||| | Sbjct 19813 ATACCTTCCTTGTCTTGAATTTTAGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCGACT 19754 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| ||||| || || || || |||||||| ||||||||||| Sbjct 19753 TCTAGGGTGATGGTCTTGCCAGTCAATGTTTTGACGAAAATTTGCAT 19707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414451178720974