Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq11312 141 6e-29 seq4549 138 7e-28 seq23389 127 1e-24 seq4550 120 2e-22 >seq11312 Length=46762 Score = 141 bits (156), Expect = 6e-29 Identities = 163/218 (75%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| ||||| |||||||| |||||||| ||||| || || || || || || ||| Sbjct 38364 ACCAAGTGCAAGGTCGACTCCTTTTGTATGTTGTAGTCGGATAACGTGCGTCCATCTTCC 38305 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 |||||||| ||| || || |||||||| || || | || ||||||||||| || | Sbjct 38304 AATTGCTTGCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGA 38245 Query 33281 A---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | ||| || || ||| ||| |||||| || | ||| |||| ||| || ||| Sbjct 38244 ATTTTGGCC---TTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTT 38188 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTTAT 33375 || || ||||||||||| |||||||||||||| ||||| Sbjct 38187 TTGCCAGTAAGAGTTTTAACGAAAATTTGCATTTTTAT 38150 >seq4549 Length=20005 Score = 138 bits (152), Expect = 7e-28 Identities = 161/216 (75%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||||||||||||||||||| || || ||||||||||||||||| || || ||| ||| Sbjct 19687 ACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCAGACAAGGTGCGTCCGTCTTCC 19628 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 |||||||| ||| ||| || ||||||||||| || | ||| || ||||| || || | Sbjct 19627 AATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGA 19568 Query 33281 A---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | ||| || || ||| || || || |||| ||| |||| ||| || ||| Sbjct 19567 ATTTTAGCC---TTAACATTTTCGATAGTATCCGATGGTTCAACTTCCAAAGTAATAGTT 19511 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373 || || || | |||||||| || |||||||| ||| Sbjct 19510 TTGCCAGTTAATGTTTTTACAAAGATTTGCATTTTT 19475 Score = 127 bits (140), Expect = 1e-24 Identities = 156/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||||||||||||||||||| ||||| || ||||||||||| | || || ||| ||| Sbjct 19915 ACCAAATGCAATGTCGACTCCTTTTGAATGTTGTAATCAGATAGGGTGCGTCCGTCTTCC 19856 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 |||||||| ||| ||| || ||||||||||| || | ||| || ||||| || || | Sbjct 19855 AATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGA 19796 Query 33281 A---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | ||| || || ||| ||| |||||| || | || || || || || || Sbjct 19795 ATTTTAGCC---TTGACGTTTTCAATGGTGTCGGAAGGCTCGACTTCTAGGGTGATGGTC 19739 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || | ||||| |||||||||||||| Sbjct 19738 TTGCCAGTCAATGTTTTGACGAAAATTTGCAT 19707 >seq23389 Length=58516 Score = 127 bits (140), Expect = 1e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || |||| || |||| ||| | ||| || || || |||||||| ||||| ||||| ||| Sbjct 44402 CCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 44461 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 || || | || ||||||||||||||| || || || || |||||||| | || Sbjct 44462 AATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGCTGCTGGTCGGGTGGA 44521 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 || || ||||| || |||| |||||| ||| ||| ||||| ||||| || Sbjct 44522 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCAATAGTGTCCGAGGGTTCGACC 44581 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || ||||| || || || ||||| || |||||||| ||||| ||||| || Sbjct 44582 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 44631 >seq4550 Length=29190 Score = 120 bits (132), Expect = 2e-22 Identities = 158/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||||||||||||||||||| || || |||||||| |||||||| ||||| || | Sbjct 5730 CGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGCCCA 5671 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || ||||| || || ||| ||| || ||||| |||||||| | || || ||||| || Sbjct 5670 TCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTG 5611 Query 33275 TC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | || ||| || ||| || ||||| |||| || |||| ||| Sbjct 5610 TCCTGGATTTTTGC---TTTAACGTTTTCGATAGTGTCCGACGGTTCCACCTCCAAAGTA 5554 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||||||| || || | |||||| || || |||||||| Sbjct 5553 ATCGTTTTCCCAGTCAAAGTTTTAACAAATATTTGCAT 5516 Score = 111 bits (122), Expect = 1e-19 Identities = 156/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||||||||||||||||||| || || |||||||| |||||||| ||||| || | Sbjct 5502 CGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGCCCA 5443 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || ||||| ||||||||| ||| || ||||| |||||||| | || || ||||| || Sbjct 5442 TCTTCCAACTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTG 5383 Query 33275 TC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | || ||| || ||| || || || | || || |||| ||| Sbjct 5382 TCCTGGATTTTTGC---TTTAACGTTTTCGATAGTATCCGATGATTCTACCTCCAAAGTG 5326 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || || | ||| || || || |||||||| Sbjct 5325 ATGGTTTTGCCGGTCAAAGTCTTAACAAATATTTGCAT 5288 Score = 105 bits (116), Expect = 4e-18 Identities = 155/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||||||||| || | || || || |||||||| |||||||| ||||| || | Sbjct 5958 CGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGCCCA 5899 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || ||||| || || ||| ||| || ||||| |||||||| | || || ||||| || Sbjct 5898 TCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTG 5839 Query 33275 TC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | || ||| || ||| || ||||| |||| || |||| ||| Sbjct 5838 TCCTGGATTTTTGC---TTTAACGTTTTCGATAGTGTCCGACGGTTCCACTTCCAAAGTG 5782 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||||||||| || | |||||| || || |||||||| Sbjct 5781 ATCGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 5744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318684081709758