Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq9454 176 4e-39 >seq9454 Length=16677 Score = 176 bits (194), Expect = 4e-39 Identities = 480/725 (66%), Gaps = 14/725 (2%) Strand=Plus/Minus Query 12968 AATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTC 13027 ||||||| || ||| | || |||||| | ||||| || | ||| |||| |||| Sbjct 13722 AATTCTAATAGCAAACGATCGGCAACATATTCTATATATTTACACATACTTTCACTGTTC 13663 Query 13028 ATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCT 13087 || || ||||| | || || | |||||||| ||||| | |||||| || | || || Sbjct 13662 ATGCCAATTAAGTCGACTGGTAAGGCTTCTGTCAAAAACTCTTTTTCAATTTTTACGGCA 13603 Query 13088 TCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGA--TAGATGCTTAAACA 13145 || | | ||| || | | | |||||| || | | | |||| || ||| ||||||| Sbjct 13602 TCAGTTATTATTTC-CAAAATCCGTTCTTTACTCG-GTTTTTGTATTAAATGTTTAAACA 13545 Query 13146 TCA-TACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAAT 13204 | | ||| ||||| ||||||||||| |||||||| | ||| | || || || ||| Sbjct 13544 TTAGTACC-GCAAATTCACAGTGCAAGCCTTCATCACGTGATATCATTTCATTAGAGAAT 13486 Query 13205 GTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaa 13264 |||| ||| ||||| | || ||||| || | ||||||||| | ||| || || | Sbjct 13485 GTTAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGAAGCGAAGCTGCCACTA 13426 Query 13265 aaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTA--CTATTTT 13322 || || || ||||| || || || || ||||| | | || ||| | || | | | Sbjct 13425 AAGAAAATACCTTCGACAGCAGCGAAAGCTATGATACGCTCGCCAAAATTAGCCGAATGC 13366 Query 13323 TACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTA 13382 | |||||| | ||||| | || || | ||||| | ||| | || | Sbjct 13365 GA--TGATATCCATGCTAGAGCCCATTCGGCCTTCTTCTTAACCAATGGCATTGTCTCAA 13308 Query 13383 TTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGC 13442 | || ||||| | ||| | ||| || || | ||||| || || || | || | Sbjct 13307 TGGCATTAAAGAGATATTCACGTTCTTTCTCATCCATGATATATGTTTCGATAAGTAGAC 13248 Query 13443 TATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCT 13502 |||||||||| ||||| | ||||||||| || ||||| ||||| ||||| || | ||| | Sbjct 13247 TATACATTTCCGAATGCACATTTTCCATGGCAATTTGAAAACCGTAAAAGCAACGAGCTT 13188 Query 13503 CTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCAC 13562 | | || ||||| || | |||||| ||| |||| || || ||||| || || || Sbjct 13187 CAGTTATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGG 13128 Query 13563 TAGCAGCaaaaaaaGC--AAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTT 13620 || ||||||||||| || ||||| |||||| | |||| || ||| Sbjct 13127 ATGCCGCAAAAAAAGCCAAAACATGTG--AAATAAAATGCCGTTCGCCGTCACTTAACCG 13070 Query 13621 TAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAAC 13680 |||||| | ||||| || | || ||||| ||| | ||||||||||| || | Sbjct 13069 ATTCCAATCGTCCATGTCTTTAGAGAGGTCAACCTCTTCAGCAGTCCAAAAAGAGGCTTC 13010 Query 13681 AGCCT 13685 |||| Sbjct 13009 CGCCT 13005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430855964713542