Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq23389 170 4e-37 seq9454 150 4e-31 seq4549 145 2e-29 seq11312 140 7e-28 seq4550 140 7e-28 seq181 84.2 5e-11 >seq23389 Length=58516 Score = 170 bits (188), Expect = 4e-37 Identities = 184/244 (75%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 104320 TACTTTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAAT 104379 ||| || ||| ||| |||| | | || || |||||||| || |||||||| ||||| Sbjct 44389 TACGTTTTTTGCTCCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAAT 44448 Query 104380 ATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTG 104439 |||||| || || | || | || ||||| | ||| |||||||| ||||| | | ||| Sbjct 44449 ATTATAATCGGACAATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGCTG 44508 Query 104440 TTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATC 104499 || || || || ||||| ||||| ||||||||||| |||||||||||||| | || || Sbjct 44509 CTGGTCGGGTGGAATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCAATAGTGTC 44568 Query 104500 GCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| ||||| || || || ||||| || || || ||||||||||| |||||||| Sbjct 44569 CGAGGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCAT 44628 Query 104560 TTTG 104563 ||| Sbjct 44629 ATTG 44632 >seq9454 Length=16677 Score = 150 bits (166), Expect = 4e-31 Identities = 356/533 (67%), Gaps = 5/533 (1%) Strand=Plus/Plus Query 268752 AGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATT 268811 |||| | || ||||||||||||| ||||| || || || ||| | ||| | |||| Sbjct 13005 AGGCGGAAGCCTCTTTTTGGACTGCTGAAGAGGTTGACCTCTCTAAAGACATGGACGATT 13064 Query 268812 GGAAAAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAG 268871 |||| |||| | ||| | ||||| || || || | || |||||||| | Sbjct 13065 GGAATCGGTTAAGTGACGGCGAACGGCATTTTATTTCACATGTTTTGGCTTTTTTTGCGG 13124 Query 268872 TTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTC 268931 |||||||| ||||| || ||| |||| || || | |||||||| || || Sbjct 13125 CATCCGATGGTATTGTTAATGAGAATTTAGTGGAACGATTTTCCCAAGAGGTTCAAATAA 13184 Query 268932 CTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGT 268991 ||||||| | || |||||||| || || || || || |||||| | ||||| || |||| Sbjct 13185 CTGAAGCTCGTTGCTTTTACGGTTTTCAAATTGCCATGGAAAATGTGCATTCGGAAATGT 13244 Query 268992 ACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTT 269051 | |||||| | || || || ||||| ||| | || ||| || || ||| | Sbjct 13245 ATAGTCTACTTATCGAAACATATATCATGGATGAGAAAGAACGTGAATATCTCTTTAATG 13304 Query 269052 CTA-TGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATA--A 269108 | | |||| || ||| | || | || || | ||||||||||| ||||||| | Sbjct 13305 CCATTGAG-ACAATGCCATTGGTTAAGAAGAAGGCCGAATGGGCTCTAGCATGGATATCA 13363 Query 269109 ACG-ATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTC 269167 || || || || || || | | | ||||| || ||||| |||||||| ||| Sbjct 13364 TCGCATTCGGCTAATTTTGGCGAGCGTATCATAGCTTTCGCTGCTGTCGAAGGTATTTTC 13423 Query 269168 TTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTA 269227 ||| || || || | || |||||| | |||||| | || | |||||||| ||| Sbjct 13424 TTTAGTGGCAGCTTCGCTTCGATATTTTGGCTAAAGAAACGTGGAATAATGCCAGGTTTA 13483 Query 269228 ACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGC 269280 || |||||||| ||| ||||| | || ||||| || ||||| || || || Sbjct 13484 ACATTCTCTAATGAAATGATATCACGTGATGAAGGCTTGCACTGTGAATTTGC 13536 >seq4549 Length=20005 Score = 145 bits (160), Expect = 2e-29 Identities = 172/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || | ||| | || || | ||| ||||| || || ||||||||||| || ||| Sbjct 19708 ATACCACCGCGTAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCA 19649 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | || | |||||||| | ||| || ||||||||||| | | || ||||| || Sbjct 19648 GACAAGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGG 19589 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || ||||| || || || |||||||| | ||||| ||||| Sbjct 19588 GGAATACCTTCCTTGTCTTGAATTTTAGCCTTAACATTTTCGATAGTATCCGATGGTTCA 19529 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || || | |||||||| || ||||| | |||||||||||| || |||||||| Sbjct 19528 ACTTCCAAAGTAATAGTTTTGCCAGTTAATGTTTTTACAAAGATTTGCATTTT 19476 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || | ||| ||||| || || || ||||| || || |||||||| || | |||||| Sbjct 19918 AGGACCAAATGCAATGTCGACTCCTTTTGAATGTTGTAATCAGATAGGGTGCGTCCGTCT 19859 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | ||| || ||||||||||| | | || ||||| || || || ||||| || || Sbjct 19858 TCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCT 19799 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||| || || || || ||||| | ||| ||| ||| || || ||||| || || ||| Sbjct 19798 TGAATTTTAGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCGACTTCTAGGGTGATGGTC 19739 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| | |||||| || || || ||||| Sbjct 19738 TTGCCAGTCAATGTTTTGACGAAAATTTGCAT 19707 >seq11312 Length=46762 Score = 140 bits (154), Expect = 7e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 ||||| | || || || || || || || || || ||||| |||| || | || ||| Sbjct 38367 AGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTGTAGTCGGATAACGTGCGTCCATCT 38308 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | ||| || ||||| ||||| | | |||||||| ||||| || |||||||||||| Sbjct 38307 TCCAATTGCTTGCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCC 38248 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||| || || || |||||||| | || ||| ||| || || || | |||||||| Sbjct 38247 TGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTT 38188 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || |||||||| ||||| || || || |||||||| Sbjct 38187 TTGCCAGTAAGAGTTTTAACGAAAATTTGCATTTT 38153 >seq4550 Length=29190 Score = 140 bits (154), Expect = 7e-28 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 104356 ATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTG 104415 ||| | ||| |||||||||||||| || ||||| || || || | || | ||| | || Sbjct 5263 ATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATTTTCCAACTG 5204 Query 104416 TTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT 104475 ||| |||||||| || | | ||||||||| || || | |||||||||||| ||||| || Sbjct 5203 TTTGCCAGCAAAGATCAAACGCTGTTGATCTGGTGGGACTCCTTCTTTATCTTGAATTTT 5144 Query 104476 TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 | ||| ||||| || | |||||| || || ||||| | || ||||| || ||||| Sbjct 5143 AGTTTTAACATTCTCAATAGTATCGGATGGCTCAACCTCCAAGGTGATAGTTTTCCCAGT 5084 Query 104536 AAGTGTTTTTACAAATATCTGCATTTT 104562 | ||| || || || ||||||||||| Sbjct 5083 CAATGTCTTCACGAAGATCTGCATTTT 5057 Score = 107 bits (118), Expect = 4e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 104356 ATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTG 104415 ||| ||||| ||||| || || || || || || || | || | || ||||| | || Sbjct 5491 ATGCAATGTGGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGCCCATCTTCCAACTG 5432 Query 104416 TTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT 104475 ||||||||||| || | | ||| || || ||||| || ||||| || ||||| || || Sbjct 5431 CTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGATTTT 5372 Query 104476 TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 |||||| || ||||| | ||||| | ||||||||| | || || || || || || Sbjct 5371 TGCTTTAACGTTTTCGATAGTATCCGATGATTCTACCTCCAAAGTGATGGTTTTGCCGGT 5312 Query 104536 AAGTGTTTTTACAAATATCTGCAT 104559 | || || |||||||| ||||| Sbjct 5311 CAAAGTCTTAACAAATATTTGCAT 5288 >seq181 Length=60274 Score = 84.2 bits (92), Expect = 5e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 || || || |||||||| || || | ||| ||||| || || || || || |||| Sbjct 37593 TTTTGTATGTTATAGTCCATTAATGTGCAACCATCTTCCAGCTGCTTGCCGGCGTAAATC 37652 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCT 104491 | | |||||| || || || || ||||||| | ||||||| | ||| | |||| Sbjct 37653 AAACGACGTTGATTTGGTGGGATGCCGTCTTTATTCCGAATCTTGGTTTTAATCGTTTCA 37712 Query 104492 ACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAAT 104551 | |||||| | ||||| || |||| || || || || || || | ||||| || || Sbjct 37713 ATAGTATCGGTCGGTTCGACATCTAAAGTGATGGTATTTCCCGTTAACGTTTTCACGAAA 37772 Query 104552 ATCTGCATTTT 104562 ||||||||||| Sbjct 37773 ATCTGCATTTT 37783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151043297579268