Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq4837 132 6e-26 seq20037 129 7e-25 >seq4837 Length=103144 Score = 132 bits (146), Expect = 6e-26 Identities = 311/465 (67%), Gaps = 16/465 (3%) Strand=Plus/Minus Query 6802 CGAGTTAATTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGC 6861 || |||||||| ||||| | | || ||||| | |||||| || | ||| || Sbjct 6210 CGTGTTAATTGCTCTTTCAATGGTTGGATATGCGTTTTATAAATGTGCGTATCGCCGGTA 6151 Query 6862 GTATGAATAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAAT 6921 || || | ||| || |||||||| | | || ||||| | | | ||||||||| Sbjct 6150 GTGTGTACAAAATCGCCTGGTTTAAGGCCGGTTAAATGTGCAATCATAGAGGTTAATAAT 6091 Query 6922 GCATAAGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACAT 6981 ||||| || |||| |||||| || ||||| | ||||| || || | |||||| | Sbjct 6090 GCATACGATGCTATATTAAATGGGACACCCAGCCCCATGTCGGCACTGCGCTGATAAAGT 6031 Query 6982 TGACAAGATAA---AATATTGTCTATAGCATAAAATTGACACAATACATGACATGGAGGT 7038 ||||| || | | ||||| ||| |||| || || ||| ||| || || ||| Sbjct 6030 TGACATGACAGCTCATTATTGGCTA---CATAGAACTGGGCCAAGCAATGGCAGGGTGGT 5974 Query 7039 AAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTT 7098 || | | |||||| ||||||||||| | || | ||||||| |||| | Sbjct 5973 AAGGCCATTTTTGGTATATCTACTGGATTCCAAGAGGACAAAATCATACGTCGATCAGTA 5914 Query 7099 GGATTTGTTTTTAATTTTGTTATAATTATTTG---TAATTGATCTATACCCTGACCTT-- 7153 |||||||| ||| |||| ||||||| || |||||||| | |||| || | Sbjct 5913 GGATTTGTAGTTA---TTGTCCTAATTATCTGCTTCAATTGATCGACTCCCT--CCGTAC 5859 Query 7154 CATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAA 7213 ||||| || ||||| | ||| || || |||||||| | ||||||||| || |||| Sbjct 5858 CATAAGTATCGCGACAAGTGCGATATTTTGCCCCAAAATGGCGCCATTGAAAACCGTAAA 5799 Query 7214 TAGGACCTAAATCACCTTCTTCACGATGATTAAATCCTAATCGAT 7258 | || || || || |||||||| |||| | | || || ||| || Sbjct 5798 TTGGCCCCAAGTCGCCTTCTTCGCGATCACTGAACCCGCATCTAT 5754 >seq20037 Length=63172 Score = 129 bits (142), Expect = 7e-25 Identities = 266/396 (67%), Gaps = 20/396 (5%) Strand=Plus/Minus Query 164722 TTACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGT--------- 164772 |||||| | ||| |||| || || |||||||| |||||||| ||||| Sbjct 48496 TTACATATAATTATTTTCGACGAAATAGATGCCATTTGCAAAGCCCGTGGGTCAGTAGCG 48437 Query 164773 GATAATATTA---TTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTA 164829 | ||| | | ||||| | || |||||||| ||| | ||||||| || || || Sbjct 48436 GGTAACAGCGGCGTCCATGACACTGTAGTTAATCAATTGTTGGCTAAAATCGACGGAGTG 48377 Query 164830 GAATCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGAT 164889 || || |||||||||||| || | |||||||| || || | ||| | |||||||| Sbjct 48376 GAGCAATTGAATAATATTTTAGTTATTGGTATGACAAATCGCCGTGACATGATTGATGAG 48317 Query 164890 GCTTTATTACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAA 164949 |||||| |||| |||||||| || ||| || |||| ||||| | || || || ||| Sbjct 48316 GCTTTACTACGTCCTGGTCGCTTGGAAGTGCAAATGGAAATCAGTTTGCCTAACGAAGTT 48257 Query 164950 GGACGCCTTCAAATTTTAAAAGTTCATGTGGCTAAAATGAAATCCTG----TGATATATT 165005 ||| | | |||||| |||| |||| | ||| | | | || | ||| | | Sbjct 48256 GGAAGAGTACAAATTCTAAATATTCACACG----AAACGTATGCGTGATTTTAATAAAAT 48201 Query 165006 ATCTCCCGATGTAGATTTAAATAAAATAGCTGCCGAAACTAAAAATTATAGTGGTGCTGA 165065 || ||||| ||| || |||| |||||| || || |||| || || ||||| Sbjct 48200 TGCTGGAGATGTGGATACGAAAGAAATCGCTGCCCTTACCAAGAATTTCAGCGGCGCTGA 48141 Query 165066 ATTAGAGGGATTAGTAAGAGCCGCTCAATCAACCGC 165101 ||| || || |||||| | || || ||||| || || Sbjct 48140 ATTGGAAGGCTTAGTACGTGCTGCCCAATCTACTGC 48105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595692709563600