Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq13983 114 7e-21 seq23255 113 2e-20 seq15288 113 2e-20 seq13875 100 1e-16 seq9647 100 1e-16 seq21002 91.5 8e-14 >seq13983 Length=216781 Score = 114 bits (126), Expect = 7e-21 Identities = 80/91 (88%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 ||| |||||| | || ||||||||| |||||||||| ||||||||||||||||||| Sbjct 31802 AATGAAAAATAACATACTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 31861 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||||||||||||||||||| Sbjct 31862 ACGACGCTCTAACCAACTGAGCTAATGGGCC 31892 >seq23255 Length=44273 Score = 113 bits (124), Expect = 2e-20 Identities = 73/81 (90%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 13891 TGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 13950 Query 11516 TGAGCTAATGGGCCGTCGACG 11536 |||||||||||||| || ||| Sbjct 13951 TGAGCTAATGGGCCCTCAACG 13971 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 16320 TGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 16379 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 16380 TGAGCTAATGGGCC 16393 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 17318 TGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 17377 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 17378 TGAGCTAATGGGCC 17391 >seq15288 Length=63311 Score = 113 bits (124), Expect = 2e-20 Identities = 87/103 (84%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAAT--CAAATTGGCCCATGAAAGGATCGAACCTTCGACCTT 11486 ||| | | |||||| || ||| || | ||||||||| |||||||||| ||||||| Sbjct 30619 AAAAAAAAAATTAAAAACAAAGGACAGAGTGGCCCATGGGGGGATCGAACCCGCGACCTT 30560 Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||| |||||||||||||||||||| Sbjct 30559 CGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 30517 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 23411 TGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 23352 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 23351 TGAGCTAATGGGCC 23338 >seq13875 Length=125840 Score = 100 bits (110), Expect = 1e-16 Identities = 60/64 (94%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| || Sbjct 92337 GGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGG 92278 Query 11528 CCGT 11531 |||| Sbjct 92277 CCGT 92274 >seq9647 Length=22465 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||| ||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 19003 TGGCCTATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 18944 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 18943 TGAGCTAATAGGCC 18930 >seq21002 Length=35457 Score = 91.5 bits (100), Expect = 8e-14 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAAT 11524 |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 3598 GGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAAT 3654 Lambda K H 0.638 0.409 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261414487552396