Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq4550 154 1e-32 seq11312 111 1e-19 seq4549 109 5e-19 >seq4550 Length=29190 Score = 154 bits (170), Expect = 1e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||||||||||||| | ||||||||||||||| | ||| ||||| || ||| | Sbjct 5958 CGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGCCCA 5899 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| |||||| || ||||||| || | ||||| ||||||||||||||||| ||| Sbjct 5898 TCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTG 5839 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | |||||||| || ||| ||| |||||| | | || || || | ||||| Sbjct 5838 TCCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCCGACGGTTCCACTTCCAAAGTGATC 5779 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||||||| | |||||| ||||| || ||||| Sbjct 5778 GTTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 5744 Score = 141 bits (156), Expect = 8e-29 Identities = 181/247 (73%), Gaps = 3/247 (1%) Strand=Plus/Minus Query 94764 TTTTAA--AAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCT 94820 |||||| ||| ||| || ||| || | | ||||||||||| ||||| || ||||||| Sbjct 5762 TTTTAACAAATATTTGCATTCCACCGCGGAGACGCAACACCAAATGCAATGTGGATTCCT 5703 Query 94821 TTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTA 94880 |||| | ||| ||||| || ||| ||| |||| |||||| || ||||||| | Sbjct 5702 TTTGTATGTTGTAATCCGACAATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAGATCA 5643 Query 94881 ATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGA 94940 | | ||||| ||||||||||||||||| ||||| | |||||||| || ||| ||| Sbjct 5642 AACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGA 5583 Query 94941 CAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGA 95000 |||||| | | || || || | || || ||||| ||||| | |||||| ||||| | Sbjct 5582 TAGTGTCCGACGGTTCCACCTCCAAAGTAATCGTTTTCCCAGTCAAAGTTTTAACAAATA 5523 Query 95001 TCTGCAT 95007 | ||||| Sbjct 5522 TTTGCAT 5516 Score = 132 bits (146), Expect = 4e-26 Identities = 179/247 (72%), Gaps = 3/247 (1%) Strand=Plus/Minus Query 94764 TTTTAA--AAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCT 94820 |||||| ||| ||| || ||| || | | ||||||||||| ||||| || ||||||| Sbjct 5534 TTTTAACAAATATTTGCATTCCACCACGGAGACGCAACACCAAATGCAATGTGGATTCCT 5475 Query 94821 TTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTA 94880 |||| | ||| ||||| || ||| ||| |||| ||| ||||| ||||||| | Sbjct 5474 TTTGTATGTTGTAATCCGACAATGTGCGCCCATCTTCCAACTGCTTTCCAGCAAAGATCA 5415 Query 94881 ATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGA 94940 | | ||||| ||||||||||||||||| ||||| | |||||||| || ||| ||| Sbjct 5414 AACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGA 5355 Query 94941 CAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGA 95000 ||| || | || || || | ||||||||||| || || | ||| || ||||| | Sbjct 5354 TAGTATCCGATGATTCTACCTCCAAAGTGATGGTTTTGCCGGTCAAAGTCTTAACAAATA 5295 Query 95001 TCTGCAT 95007 | ||||| Sbjct 5294 TTTGCAT 5288 Score = 82.4 bits (90), Expect = 7e-11 Identities = 163/240 (68%), Gaps = 1/240 (0%) Strand=Plus/Minus Query 94769 AAAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || || | ||| || || ||||| || | || ||||| || || | Sbjct 5299 AAATATTTGCATACCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAAT 5240 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| || ||| | ||| | || |||| |||||| || ||||||| || | || Sbjct 5239 GTTGTAGTCGGAGAGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGCTG 5180 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 |||||||| || | |||||||| || | |||||| | || || | | ||| || Sbjct 5179 TTGATCTGGTGGGACTCCTTCTTTATCTTGAATTTTAGTTTTAACATTCTCAATAGTATC 5120 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || || | ||||| ||||| ||||| | || ||||| ||||||||||| Sbjct 5119 GGATGGCTCAACCTCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCAT 5060 >seq11312 Length=46762 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||||||||| || || |||||||| | ||| || ||| | ||| ||| ||| Sbjct 38364 ACCAAGTGCAAGGTCGACTCCTTTTGTATGTTGTAGTCGGATAACGTGCGTCCATCTTCC 38305 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | || || || | || || || | ||| |||||||||||||| |||||||| || | | Sbjct 38304 AATTGCTTGCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGA 38245 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| |||||||| | | |||||| | | || || || | || || ||||| Sbjct 38244 ATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTG 38185 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||||||||| || || || ||||| Sbjct 38184 CCAGTAAGAGTTTTAACGAAAATTTGCAT 38156 >seq4549 Length=20005 Score = 109 bits (120), Expect = 5e-19 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCCT 94856 ||||| ||||| || || |||||||| | ||| ||||| |||| || | || | Sbjct 19915 ACCAAATGCAATGTCGACTCCTTTTGAATGTTGTAATCAG--ATAGGGTGCGTCCGTCTT 19858 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||| || || || |||| || || | |||||||||||| ||||||||||| ||||| | Sbjct 19857 CCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTT 19798 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 |||||| ||||||||| | | ||||| | | ||||| || | |||||||| | Sbjct 19797 GAATTTTAGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCGACTTCTAGGGTGATGGTCT 19738 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| | ||||| || || || ||||| Sbjct 19737 TGCCAGTCAATGTTTTGACGAAAATTTGCAT 19707 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| ||||| || || ||||| || | || ||||| || ||| || ||| Sbjct 19687 ACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCAGACAAGGTGCGTCCGTCTTCC 19628 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | || || || |||| || || | |||||||||||| ||||||||||| ||||| | | Sbjct 19627 AATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGA 19568 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| ||||| || ||| ||| || | | || || || | || || ||||| Sbjct 19567 ATTTTAGCCTTAACATTTTCGATAGTATCCGATGGTTCAACTTCCAAAGTAATAGTTTTG 19508 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | ||||| |||||||| ||||| Sbjct 19507 CCAGTTAATGTTTTTACAAAGATTTGCAT 19479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448156314781560