Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020
14-03-12] 24,071 sequences; 363,107,242 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq7480 176 7e-40
seq15406 172 9e-39
seq17880 170 3e-38
seq5505 170 3e-38
>seq7480
Length=1286
Score = 176 bits (194), Expect = 7e-40
Identities = 199/267 (75%), Gaps = 0/267 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
||||| |||||||| | | | || ||||| || ||||| || || || || ||||||
Sbjct 873 GCTAAACGTCATCGTAAAGTGTTGCGTGATAATATTCAAGGTATAACAAAACCGGCTATC 932
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
| ||| ||||||||||||| || || || ||| ||||||| ||| | |||||||| |
Sbjct 933 AGGCGTTTGGCTCGTCGTGGCGGTGTGAAACGTATCTCTGGCTTGATTTATGAAGAAACC 992
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| |||||| ||| | ||| | | | ||||| | ||||||| || ||||| |||
Sbjct 993 CGTGGTGTTTTAAAGGTTTTCTTAGAAAATGTTATTCGTGATGCTGTCACATATACAGAG 1052
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|||||||| || || || || || | |||||| |||| ||||| ||||| | ||||||
Sbjct 1053 CACGCTAAGCGAAAAACAGTTACAGCAATGGATGTCGTTTATGCTTTGAAGAGACAAGGC 1112
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699
|| | | ||||||||||| |||||
Sbjct 1113 CGCACTTTATATGGTTTTGGTGGTTAA 1139
>seq15406
Length=166216
Score = 172 bits (190), Expect = 9e-39
Identities = 194/260 (75%), Gaps = 0/260 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
||||| |||||||| | | | || ||||| |||||||| || | || || ||||||
Sbjct 106292 GCTAAACGTCATCGTAAAGTGTTGCGTGATAATATCCAAGGTATAAAAAAACCGGCTATC 106351
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
| ||| ||||||||||||| || || || ||| ||||||| ||| | |||||||| |
Sbjct 106352 AGGCGTTTGGCTCGTCGTGGCGGTGTGAAACGTATCTCTGGTTTGATTTATGAAGAAACC 106411
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| |||| ||||| | ||| | | | ||||| | ||||||| || ||||| |||
Sbjct 106412 CGTGGTGTTCTGAAGGTTTTCTTAGAAAATGTTATTCGTGATGCTGTCACATATACAGAG 106471
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|||||||| || || || || || | |||||| |||| ||||| |||||| | ||||||
Sbjct 106472 CACGCTAAGCGAAAAACAGTTACAGCAATGGATGTCGTTTATGCTTTGAAAAGACAAGGC 106531
Query 16673 CGTAAGATTTATGGTTTTGG 16692
|| | | || ||||||||
Sbjct 106532 CGCACTTTATACGGTTTTGG 106551
>seq17880
Length=23348
Score = 170 bits (188), Expect = 3e-38
Identities = 198/267 (74%), Gaps = 0/267 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
||||| |||||||| | | | || ||||| |||||||| || || || || ||||||
Sbjct 19975 GCTAAACGTCATCGTAAAGTGTTACGTGATAATATCCAAGGTATAACAAAACCGGCTATC 19916
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
| ||| ||||||||||||| || || || ||| ||||||| ||| | |||||||| |
Sbjct 19915 AGGCGTTTGGCTCGTCGTGGCGGTGTGAAACGTATCTCTGGCTTGATTTATGAAGAAACC 19856
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| ||||||||| | ||| | | | ||||| | ||| ||| || ||||| |||
Sbjct 19855 CGTGGCGTTTTGAAGGTTTTCTTAGAAAATGTTATTCGTGACGCTGTCACATATACTGAG 19796
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|| ||||| || || || || || | |||||| |||| ||||| ||||| | ||||||
Sbjct 19795 CATGCTAAGCGAAAAACAGTTACAGCAATGGATGTCGTTTATGCTTTGAAGAGACAAGGC 19736
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699
|| | | ||||||||||| |||||
Sbjct 19735 CGCACTTTATATGGTTTTGGCGGTTAA 19709
>seq5505
Length=13797
Score = 170 bits (188), Expect = 3e-38
Identities = 198/267 (74%), Gaps = 0/267 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
||||| |||||||| | | | || ||||| |||||||| || || || || ||||||
Sbjct 1155 GCTAAACGTCATCGTAAAGTGTTACGTGATAATATCCAAGGTATAACAAAACCGGCTATC 1096
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
| ||| ||||||||||||| || || || ||| ||||||| ||| | |||||||| |
Sbjct 1095 AGGCGTTTGGCTCGTCGTGGCGGTGTGAAACGTATCTCTGGCTTGATTTATGAAGAAACC 1036
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| ||||||||| | ||| | | | ||||| | ||| ||| || ||||| |||
Sbjct 1035 CGTGGCGTTTTGAAGGTTTTCTTAGAAAATGTTATTCGTGACGCTGTCACATATACTGAG 976
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|| ||||| || || || || || | |||||| |||| ||||| ||||| | ||||||
Sbjct 975 CATGCTAAGCGAAAAACAGTTACAGCAATGGATGTCGTTTATGCTTTGAAGAGACAAGGC 916
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699
|| | | ||||||||||| |||||
Sbjct 915 CGCACTTTATATGGTTTTGGCGGTTAA 889
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79053191716203
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |