Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq7480 176 7e-40 seq15406 172 9e-39 seq17880 170 3e-38 seq5505 170 3e-38 >seq7480 Length=1286 Score = 176 bits (194), Expect = 7e-40 Identities = 199/267 (75%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||| |||||||| | | | || ||||| || ||||| || || || || |||||| Sbjct 873 GCTAAACGTCATCGTAAAGTGTTGCGTGATAATATTCAAGGTATAACAAAACCGGCTATC 932 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | ||| ||||||||||||| || || || ||| ||||||| ||| | |||||||| | Sbjct 933 AGGCGTTTGGCTCGTCGTGGCGGTGTGAAACGTATCTCTGGCTTGATTTATGAAGAAACC 992 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| |||||| ||| | ||| | | | ||||| | ||||||| || ||||| ||| Sbjct 993 CGTGGTGTTTTAAAGGTTTTCTTAGAAAATGTTATTCGTGATGCTGTCACATATACAGAG 1052 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||||| || || || || || | |||||| |||| ||||| ||||| | |||||| Sbjct 1053 CACGCTAAGCGAAAAACAGTTACAGCAATGGATGTCGTTTATGCTTTGAAGAGACAAGGC 1112 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | ||||||||||| ||||| Sbjct 1113 CGCACTTTATATGGTTTTGGTGGTTAA 1139 >seq15406 Length=166216 Score = 172 bits (190), Expect = 9e-39 Identities = 194/260 (75%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||| |||||||| | | | || ||||| |||||||| || | || || |||||| Sbjct 106292 GCTAAACGTCATCGTAAAGTGTTGCGTGATAATATCCAAGGTATAAAAAAACCGGCTATC 106351 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | ||| ||||||||||||| || || || ||| ||||||| ||| | |||||||| | Sbjct 106352 AGGCGTTTGGCTCGTCGTGGCGGTGTGAAACGTATCTCTGGTTTGATTTATGAAGAAACC 106411 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| |||| ||||| | ||| | | | ||||| | ||||||| || ||||| ||| Sbjct 106412 CGTGGTGTTCTGAAGGTTTTCTTAGAAAATGTTATTCGTGATGCTGTCACATATACAGAG 106471 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||||| || || || || || | |||||| |||| ||||| |||||| | |||||| Sbjct 106472 CACGCTAAGCGAAAAACAGTTACAGCAATGGATGTCGTTTATGCTTTGAAAAGACAAGGC 106531 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | || |||||||| Sbjct 106532 CGCACTTTATACGGTTTTGG 106551 >seq17880 Length=23348 Score = 170 bits (188), Expect = 3e-38 Identities = 198/267 (74%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||| |||||||| | | | || ||||| |||||||| || || || || |||||| Sbjct 19975 GCTAAACGTCATCGTAAAGTGTTACGTGATAATATCCAAGGTATAACAAAACCGGCTATC 19916 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | ||| ||||||||||||| || || || ||| ||||||| ||| | |||||||| | Sbjct 19915 AGGCGTTTGGCTCGTCGTGGCGGTGTGAAACGTATCTCTGGCTTGATTTATGAAGAAACC 19856 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||||||||| | ||| | | | ||||| | ||| ||| || ||||| ||| Sbjct 19855 CGTGGCGTTTTGAAGGTTTTCTTAGAAAATGTTATTCGTGACGCTGTCACATATACTGAG 19796 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || ||||| || || || || || | |||||| |||| ||||| ||||| | |||||| Sbjct 19795 CATGCTAAGCGAAAAACAGTTACAGCAATGGATGTCGTTTATGCTTTGAAGAGACAAGGC 19736 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | ||||||||||| ||||| Sbjct 19735 CGCACTTTATATGGTTTTGGCGGTTAA 19709 >seq5505 Length=13797 Score = 170 bits (188), Expect = 3e-38 Identities = 198/267 (74%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||| |||||||| | | | || ||||| |||||||| || || || || |||||| Sbjct 1155 GCTAAACGTCATCGTAAAGTGTTACGTGATAATATCCAAGGTATAACAAAACCGGCTATC 1096 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | ||| ||||||||||||| || || || ||| ||||||| ||| | |||||||| | Sbjct 1095 AGGCGTTTGGCTCGTCGTGGCGGTGTGAAACGTATCTCTGGCTTGATTTATGAAGAAACC 1036 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||||||||| | ||| | | | ||||| | ||| ||| || ||||| ||| Sbjct 1035 CGTGGCGTTTTGAAGGTTTTCTTAGAAAATGTTATTCGTGACGCTGTCACATATACTGAG 976 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || ||||| || || || || || | |||||| |||| ||||| ||||| | |||||| Sbjct 975 CATGCTAAGCGAAAAACAGTTACAGCAATGGATGTCGTTTATGCTTTGAAGAGACAAGGC 916 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | ||||||||||| ||||| Sbjct 915 CGCACTTTATATGGTTTTGGCGGTTAA 889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79053191716203