Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq9454 212 7e-50 >seq9454 Length=16677 Score = 212 bits (234), Expect = 7e-50 Identities = 479/715 (67%), Gaps = 18/715 (3%) Strand=Plus/Minus Query 21291 CCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAAT 21350 ||| |||| ||| || | ||| || ||| |||||||||||| |||||| ||||| | Sbjct 13724 CCAATTCTAATAGCAAACGATCGGCAACATATTCTATATATTTACACATACTTTCACTGT 13665 Query 21351 TCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGG 21410 |||| || || || | || || | |||| ||||||||| |||||| || |||| Sbjct 13664 TCATGCCAATTAAGTCGACTGGTAAGGCTTCTGTCAAAAACTCTTTTTCAATTTTTACGG 13605 Query 21411 CTTCAACAATTATATTTATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACA 21470 | ||| ||||| | | |||| | |||| || | | ||| |||||||||| Sbjct 13604 CATCAGTTATTATTTCCAAAATCCGTTCTTTACTCGGTTTTTGTATTAAATGTTTAAACA 13545 Query 21471 TCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATG 21530 | | ||||| ||||| ||||| |||||||| | ||| | ||||||||| |||| Sbjct 13544 TTAGTACCGCAAATTCACAGTGCAAGCCTTCATCACGTGATATCATTTCATTAGAGAATG 13485 Query 21531 TTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAA 21589 ||||||| ||||||| ||| | || |||| ||||||||| || || || ||| || | Sbjct 13484 TTAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGAAGCGAA-GCTGCCACTA 13426 Query 21590 AAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTA 21649 |||||||| || || || ||||| || || | | || || || | ||| | | Sbjct 13425 AAGAAAATACCTTCGACAGCAGCGAAAGCTATGATACGCTCGCCAAAATTAG---CCGAA 13369 Query 21650 TCC---AATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAAT-CAATTGTATC 21705 | | |||||||| | ||||||| ||||| | |||| |||| ||||| || Sbjct 13368 TGCGATGATATCCATGCTAGAGCCCATTCGGCCTTCTTCTTAA-CCAATGGCATTGTCTC 13310 Query 21706 AATAGCTTTTAAAAGATGAtt----tttttCATCTACATCGGTTATGNNNNNNNNNNNNN 21761 ||| || || || |||| ||| || || ||| |||| | || Sbjct 13309 AATGGCATTAAAGAGAT-ATTCACGTTCTT--TCT-CATCCATGATATATGTTTCGATAA 13254 Query 21762 NNNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATC 21821 |||||||||||| ||||| | |||||| || || || ||||| |||||||| || | Sbjct 13253 GTAGACTATACATTTCCGAATGCACATTTTCCATGGCAATTTGAAAACCGTAAAAGCAAC 13194 Query 21822 TTGCCTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTC 21881 || || | ||||||||| ||||||||| | || || ||||| || || | Sbjct 13193 GAGCTTCAGTTATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATAC 13134 Query 21882 CATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTA 21941 |||| || |||||||| ||||| | || | ||||||| |||||| || ||| Sbjct 13133 CATCGGATGCCGCAAAAAAAGCCAAAACATGTGAAATAAAATGCCGTTCGCCGTCACTTA 13074 Query 21942 ATTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAA 21996 | |||||||| | ||||| || | || || ||||||| |||||||| Sbjct 13073 ACCGATTCCAATCGTCCATGTCTTTAGAGAGGTCAACCTCTTCAGCAGTCCAAAA 13019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531740757698040