Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq15038 105 6e-18 seq20437 102 8e-17 seq1380 87.8 2e-12 seq4549 82.4 7e-11 >seq15038 Length=36294 Score = 105 bits (116), Expect = 6e-18 Identities = 333/506 (66%), Gaps = 19/506 (4%) Strand=Plus/Plus Query 147449 ATGCTGATTGACCACTTGATACTCGCCCGACAGAACTCTTCGTACGTACAAATTACTAGT 147508 ||| |||||||| || | |||| || ||||| || | |||| ||| | || ||| Sbjct 4790 ATGATGATTGACTACGATAAACTCACCAGACAGTACGCGTCGTGTGTAAATGTTTGAAGT 4849 Query 147509 AAACGGCTCGAACGACTCGTTGTTACCTAGAATCTGTGCAGTCGTTGCCGTCGGCATGTA 147568 | ||||||| || |||||||||||||| ||||| || ||||| | ||||| ||||| Sbjct 4850 ATACGGCTCAAAAGACTCGTTGTTACCAAGAATTTGAGCAGTAGACGCCGTAGGCATTGG 4909 Query 147569 AGCAATCAATAATGAATTGCGTAAGCCGTGCATAGCCATTTCTCGCTTAAGCTCGTCCCA 147628 ||| | || || |||||||| | || | | || || ||||| || ||| Sbjct 4910 AGCTACCAGCAAAGAATTGCGCACTCCACACCTTTTAATGTCGTCTTTAAGAGCGGACCA 4969 Query 147629 GTTCCAAAGATCATTCGATTGGTTAATATTCCACAAATCAAACTGTAAAAGTCCACAACT 147688 ||||| ||| || | | | | ||| ||||| |||| | || | | || ||| Sbjct 4970 ATTCCATAGACCAGTAG---GCGTTTTATCCCACATATCATATTGAAGGATACCTTTACT 5026 Query 147689 TGCAGGGCTTCCATCGTAAGAATCGTATGTTCCGTGCAGTTTAGCTAGTTCGATACT--- 147745 | || || || || || | ||||| | |||| ||||| || | ||| ||| Sbjct 5027 AACTGGACTACCTTCATATGTTTCGTACGGACCGTATAGTTTGGCCAATTCACAACTAGC 5086 Query 147746 TTGACTTAGTGCACCATAATAAATAGTTTCTGAAATCTTTTTATTTAAATCTCTAGCCTC 147805 || || || ||||| ||||| || ||||| |||| | ||||||||| | ||| | Sbjct 5087 TT--CTAAG-GCACCGTAATATATTGTTTCAAAAATTTGTTTATTTAAGCGTGCAGCATT 5143 Query 147806 TTGGCTGTCGTAGGGCATATC-CA--AAATGGCGAACGTATCCGCAAGTCCTTGAATACC 147862 || ||| |||||||| ||| | || ||| | || || |||| |||||| | || Sbjct 5144 TTCGCTTTCGTAGGG-ATAACGCATTAAAATTAGTGCG--TCAGCAAATCCTTGGACGCC 5200 Query 147863 GATACCGATGGGTCGGTGTCTGAAATTCGATGCTTGAGCGCT--AGCCAACGGATAAAAA 147920 | ||| || || || || | ||||| || ||| | | | ||| || || || Sbjct 5201 TAAACCAATTGGACGATGACGAAAATTAGA--CTTTCTGGTTTCCGGCAATGGGTAGTAA 5258 Query 147921 TTCAAGTCGATAATTTTATTGAGATT 147946 || | ||||| ||||| |||||||| Sbjct 5259 TTGATATCGATTATTTTGTTGAGATT 5284 >seq20437 Length=48329 Score = 102 bits (112), Expect = 8e-17 Identities = 158/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 71642 TATAGTTTATTGCAATTCGAGCATAATCAAACGCATGATGAACTATGGAATGCTGCTCAG 71701 ||||| ||| | |||||||||| || || || ||||| | |||||| | ||||| Sbjct 15996 TATAGCTTAGAGGAATTCGAGCAGGCTCGTACCCACGATGATTTGTGGAATTCAGCTCAA 15937 Query 71702 CGACAGCT-ACGCAATGAGGGTAAAATTCACGGATACCTACGCATGTACTGGGCCAAAAA 71760 | || | | || | ||||||||||| ||||| | | |||||||| ||||| ||||| Sbjct 15936 CTGCAATTGATGCGA-GAGGGTAAAATGCACGGCTTTTTGCGCATGTATTGGGCTAAAAA 15878 Query 71761 GATTCTCGAGTGGACTCAAACTCCCGAGCAGGCGCTCGAGTATTCTATTTATCTAAACGA 71820 |||| | || ||| || ||| || || | || | || | ||| | | |||| || Sbjct 15877 GATTTTAGAATGGTCTAAAAGCCCTGAAGACGCTTTGGAATTTTCGCTACTTTTAAATGA 15818 Query 71821 TAGATACAGTCTCGACGGTCGCGATCCTAACGGTTATGTCGGT 71863 |||||||||| | || || ||||| || |||||||||||| Sbjct 15817 TAGATACAGTTTGGATGGAACGGATCCCAATGGTTATGTCGGT 15775 >seq1380 Length=63849 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 115195 AAAGGCTTGCACGGATTTCATGTTCACGAATTCGGCGACACGAGCAACGGCTGCACGTCT 115254 || || || || || |||||||||||||||||||| |||| | ||||||||||| ||| Sbjct 30940 AAGGGATTACATGGTTTTCATGTTCACGAATTCGGGGACAATACTAACGGCTGCACTTCT 30999 Query 115255 GCAGGCGAGCATTTTAACCCTACGAACATGGCTCACGGTGCGCCCAACTCTGCCGTTCGT 115314 || || | ||||||||| ||| || | | ||||| || |||| | | ||| Sbjct 31000 GCCGGTGCGCATTTTAATCCTTGCAATAAAGAGCACGGAGCACCCACTGATAATGAGCGT 31059 Query 115315 CACGTCGGTGATCTTGGCAATATTGA 115340 || |||||||| | |||||| |||| Sbjct 31060 CATATCGGTGATTTGGGCAATGTTGA 31085 >seq4549 Length=20005 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 ||||||||| | |||||||||||||||||||| ||| | || || | ||| | ||| || Sbjct 19476 AAAATGCAAATCTTTGTAAAAACATTAACTGGCAAAACTATTACTTTGGAAGTTGAACCA 19535 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 || || ||||| | || || || ||| ||||| ||||| || || || ||| Sbjct 19536 TCGGATACTATCGAAAATGTTAAGGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGAT 19595 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || ||| | | |||| | ||||| ||| | ||||| | | | | | || || Sbjct 19596 CAGCAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCTTGTCTGATTAC 19655 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||| || || || || | ||| ||||||| Sbjct 19656 AATATTCAGAAGGAGTCGACATTGCATTTGGTCCT 19690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478518376467120