Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq15038 170 5e-37 seq4837 102 2e-16 >seq15038 Length=36294 Score = 170 bits (188), Expect = 5e-37 Identities = 1095/1736 (63%), Gaps = 52/1736 (3%) Strand=Plus/Minus Query 363442 ATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGAT 363501 ||||| || || || || ||||||||||||||||| |||||||| || || || || Sbjct 6223 ATTGTGGAGCGGCCACAACATATGTTAATGCGTGTCGCTATTGGCATTCACGGCGATGAC 6164 Query 363502 GTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCACGCACGCCACG 363561 |||| || || |||||||| ||||| || | | || || || || || | Sbjct 6163 ATTGAAGCGGCTATTGAAACTTATAATCTCATGTCGGAGGGTTACTTTACTCATGCTTCC 6104 Query 363562 CCAACAATGTACAATGCTGGAACTCGTAA-TCCACAGATGTCTTCTTGCTTTCTTCTAAA 363620 ||||| | | ||||| || | || |||||| |||| || ||||| | |||| Sbjct 6103 CCAACTTTATTTGGTGCTGCTAC-CATACGTCCACAATTGTCGTCCTGCTTCTTGCTAAC 6045 Query 363621 AATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGA--ATTGTGCTCTTATT 363678 ||| ||| || ||||| || ||||| | ||| | || ||| | |||||| ||| Sbjct 6044 TATGCCGGAAGACTCCATTGATGGTAT-TATGA-AGGCTGTAGACCAATGTGCTAAAATT 5987 Query 363679 TCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACA--GAACAGTT 363736 || ||| || || ||||| ||| || || || | || ||| | | || Sbjct 5986 TCTAAGTCGGCCGGTGGAATAGGTCTAAATATTCATTGCATACGAGCAAAAGGGACTAAG 5927 Query 363737 ACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACA 363796 |||| | | | || | || || | || || ||||| ||| | ||| |||| ||| Sbjct 5926 ACAT-CTTGTAATAGTGACGTA-TCTGACGGTCTTGTTCCTATGTTGCGTCTGTTCAACA 5869 Query 363797 ATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATC 363856 || ||| | || |||||||| ||||| ||||| || ||||| |||||||| || Sbjct 5868 ATGTTGCCCGTTATGTCGACCAAGGTGGTGGAAAACGTCCGGGGGCTTTTGCTATATACT 5809 Query 363857 TCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAG 363916 | |||||| || || |||||||| || ||||| | | ||||| ||||| |||| Sbjct 5808 TAGAGCCTTGGCACGCAGATATTTTCGAATTTCTAAATTTGAAAAAAAATACGGGTAAAG 5749 Query 363917 AGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGC 363976 |||| |||||||| ||| | || ||||| || ||| | |||| | || ||||| Sbjct 5748 AGGAGGATCGTGCACGAGATTTATTTTATGCTCTGTGGATACCTGATCTGTTCATGAAAA 5689 Query 363977 GCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCG 364036 | || ||||| | | || ||||||| || | || || || |||| || || | | | Sbjct 5688 GAGTTGAGGCTGATGAGCATTGGTCTCTAATGTGTCCCCATAAATGCCCTGGCTTGTGTG 5629 Query 364037 ATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTC 364096 | | | || ||| | | || | |||||| || || ||| ||||| || || Sbjct 5628 AAATTTATGGAGACAAATTTGATAGATTATACGTGAAATACGAAGACGAGGGCAAAGCGA 5569 Query 364097 GTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATT-CGCAGATTGAGACA 364155 || ||||| || | | ||||||| || || ||| | | | || | || || Sbjct 5568 ACAAAACAATAAAAGCTCGTGACTTATGGTTCGCAAT-ATGCAGTGCCCAAGTAGAAACC 5510 Query 364156 GGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTT 364215 ||||| || || ||| | |||||||| | ||||||||||| || || ||| | || Sbjct 5509 GGAACTCCTTACATGCTTTACAAAGACGCTTGCAACCGCAAAAGTAATCAACAGAATGTT 5450 Query 364216 GGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAG 364275 || || || | || ||| ||||||| || || | ||||| || | | || || Sbjct 5449 GGCACTATAAAATGCAGTAACTTATGTACAGAAATCGTCGAATATACGTCGGCTGAAGAA 5390 Query 364276 ACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTA---AAAGATGGTACT 364332 | || || || || || || || || ||| | ||| ||| | | || Sbjct 5389 ATAGCAGTTTGCAATCTGGCATCAATTGCGTTGAATATGTTCGTAACGACAAATAAACAA 5330 Query 364333 TTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTT 364392 | ||| || | || | || || | | | | || | |||||| |||| | Sbjct 5329 TATGATTTTCACAAACTCAAAGAAGTTGCAAAGCTTATAACAAGGAATCTCAACAAAATA 5270 Query 364393 ATCGACAAGAATTATTATCCAATTCCTGAAGCC-GAGCGTTCTAATATGCGTCATCGCCC 364451 ||||| | ||||| || ||| | || ||| || || | |||||| | |||||||| || Sbjct 5269 ATCGATATCAATTACTACCCATTGCCGGAAACCAGAAAG-TCTAATTTTCGTCATCGTCC 5211 Query 364452 GATTGGTCTTGGTGTACAGGGCCTCGCTGACG------TTTTTATG----ATGCTCAAGA 364501 |||||| | || || || || | ||||||| |||| ||| || | | || Sbjct 5210 AATTGGTTTAGGCGTCCAAGGATTTGCTGACGCACTAATTTTAATGCGTTATCCCTACGA 5151 Query 364502 TGGCATTTGATTCGCCTG-ACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTAT 364560 || || ||| ||||| ||||||| | || ||||||||||| ||| Sbjct 5150 AAGC----GAAAATGCTGCACGCT-------TAAATAAACAAATTTTTGAAACAATATAT 5102 Query 364561 TTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTAT 364620 | | || | ||| ||||| ||||| ||| | || |||| || ||| Sbjct 5101 TACGGTGCCTTAGAAGCTAGTTGTGAATTGGCCAAACTATACGGTCCGTACGAAACATAT 5042 Query 364621 GAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCT 364680 || || || || | || | | || | |||| | ||| || ||||| || Sbjct 5041 GAAGGTAGTCCAGTTAGTAAAGGTATCCTTCAATATGATATGTGGGATAAAACGCCTACT 4982 Query 364681 GTCCGATGGAACTGGGATACGCTACGT---TCCAACGTTAAGAAGCATGGTACTCGCAAC 364737 | | |||||| ||| | |||| | | | || |||| | | ||| ||||| Sbjct 4981 GGTCTATGGAATTGG--TCCGCT-CTTAAAGACGACATTAAAAGGTGTGGAGTGCGCAAT 4925 Query 364738 TCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAG 364797 || | | ||| || ||||| ||||| |||||||| || || || || ||||||||| Sbjct 4924 TCTTTGCTGGTAGCTCCAATGCCTACGGCGTCTACTGCTCAAATTCTTGGTAACAACGAG 4865 Query 364798 TGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCG 364857 | || || |||| ||| || |||| |||| || || || || || || ||| Sbjct 4864 TCTTTTGAGCCGTATACTTCAAACATTTACACACGACGCGTACTGTCTGGTGAGTTTATC 4805 Query 364858 GTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATG 364917 ||||| ||| | | | | || ||| | | || || || ||| ||| | |||| Sbjct 4804 GTAGTCAATCATCATTTGCTTAAAGATTTGACTGAATTGGGCCTTTGGAATGATAACATG 4745 Query 364918 AAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGAT 364977 || |||| || | || | || || | || ||||| || | || ||| | Sbjct 4744 AAAAACTTAATATTGGCACATCGCGGCTCAATACAAAACATCGAAGCCATACCTGAA-AG 4686 Query 364978 CTGAAGCCTATT-TACAAAACCGTATGGGAAATTTCCATGCGAACTC--TCATTGATATG 365034 | || ||| || ||||| || ||||||||||| | ||| || ||| | ||| Sbjct 4685 CATAAAAGAATTATATAAAACAGTTTGGGAAATTTC--GGTGAAGTCAACCATCAACATG 4628 Query 365035 GCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAG 365094 || | |||||||| ||||||||| || ||||| || |||||| || | | || | Sbjct 4627 GCTGTTGATCGCGGAGCTTTTATCGACCAAAGCCAATCATTTAACATACACGTAGCTGAA 4568 Query 365095 CCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAA 365150 || | | | || | | || || ||||| || || |||||| |||| ||||| Sbjct 4567 CCTAGTTATGGTAAATTATCTTCTATACATTTTTATGGTTGGAAAGCCGG-CTTAA 4513 >seq4837 Length=103144 Score = 102 bits (112), Expect = 2e-16 Identities = 321/491 (65%), Gaps = 6/491 (1%) Strand=Plus/Plus Query 111482 CGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTA 111541 ||||||||| || | || ||| ||||||| |||||||||||||| ||||| ||| | || Sbjct 5776 CGAAGAAGGCGACTTGGGGCCAATTTACGGTTTTCAATGGCGCCATTTTGGGGCAAAATA 5835 Query 111542 CAAAACCATGCACGACTCATATGATTCACAGGGAACTGATCAATTACAGAATGTCATTGA 111601 || | ||| | |||| | | ||||| |||||||| || | | ||| | Sbjct 5836 TCGCACTTGTCGCGATACTTATGGTACGGAGGGAGTCGATCAATTGAAGCAGATAATT-A 5894 Query 111602 TCAAATTAAGAAC-AACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATG 111660 | | ||| || || || ||| ||| || || ||| || | ||||| ||| | Sbjct 5895 GGACAATAACTACAAATCCTACTGATCGACGTATGATTTTGTCCTCTTGGAATCCAGTAG 5954 Query 111661 CATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACG 111720 | ||||||||| | ||||| || ||| || |||||| |||||| | | Sbjct 5955 ATATACCAAAAATGGCCTTACCACCCTGCCATTGCTTGGCCCAGTTCTATGTAGCCAATA 6014 Query 111721 GGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTA 111780 ||| ||||| ||| | |||||||| ||| || || || || ||||| || |||| Sbjct 6015 ATGAGCTGTCATGTCAACTTTATCAGCGCAGTGCCGACATGGGGCTGGGTGTCCCATTTA 6074 Query 111781 ATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGG 111840 |||| ||| || ||| || | || | | || || ||||| || || ||||| | Sbjct 6075 ATATAGCATCGTATGCATTATTAACCTCTATGATTGCACATTTAACCGGCCTTAAACCAG 6134 Query 111841 GTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGATGCACTTA 111900 | || || | ||| || ||| ||| |||| |||| | || || || | || | | Sbjct 6135 GCGATTTTGTACACACTACCGGCGATACGCACATTTATAAAACGCATATCCAACCATTGA 6194 Query 111901 AAACACAGTTGAAGCGCAAACCATACG-ATTTCCCAACGATTCATATCAATAACATGCCG 111959 || || || | |||||||| | | |||||| || ||| ||| || ||| ||||| Sbjct 6195 AAGAGCAATTAACACGCAAACCGCATGCATTTCCTAA--ATTGATAATAA-AACGTGCCG 6251 Query 111960 AAAACAATCTT 111970 | | ||| || Sbjct 6252 TAGAAAATATT 6262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302951633123522