Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq23389 107 2e-18 seq11312 100 2e-16 seq4549 98.7 9e-16 seq15038 93.3 4e-14 seq1380 84.2 2e-11 >seq23389 Length=58516 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | ||||||||||| |||| || || | || || | || ||||| | Sbjct 44632 CAATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACC 44573 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | ||||| || || | || ||| |||||| |||||||| || || || ||||| Sbjct 44572 CTCGGACACTATTGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGA 44513 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 || ||| || |||||| || || |||||| | ||||||| | | | | |||||| Sbjct 44512 CCAGCAGCGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACATTGTCCGATTA 44453 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||| |||||||||||||| || | ||| | ||| | | ||| |||| ||| Sbjct 44452 TAATATTCAAAAAGAATCCACCTTACATCTTGTGCTGCGTTTGCGAGGTGGA 44401 >seq11312 Length=46762 Score = 100 bits (110), Expect = 2e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 23972 TACTTTTTAGCCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTAC 24031 || ||||||| | ||||||||| | || || ||||| | ||||| ||| | ||||| Sbjct 38137 TAATTTTTAGAATATAAAAATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACTATTAC 38196 Query 24032 CATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGA 24091 | ||||| ||| | |||||| || || | ||||| || ||| || ||||| Sbjct 38197 TTTGGAAGTTGAGCCTTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGA 38256 Query 24092 AGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAG 24151 |||||| ||||| |||||||| | |||||| || ||||||||| | ||||||| | Sbjct 38257 AGGCATTCCTCCAGATCAACAACGTTTGATTTTCGCTGGCAAGCAATTGGAAGATG-GAC 38315 Query 24152 AAACGTCA-GCGATTATAACATTCAAAAAGAATCTAC 24187 |||| | ||| || ||||| ||||| || || || Sbjct 38316 GCACGTTATCCGACTACAACATACAAAAGGAGTCGAC 38352 >seq4549 Length=20005 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || |||||||| ||||| || | || ||| | ||||||||| | | Sbjct 19707 ATGCAAATTTTCGTCAAAACATTGACTGGCAAGACCATCACCCTAGAAGTCGAGCCTTCC 19766 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| || ||| ||||| ||||| || || || ||||| Sbjct 19767 GACACCATTGAAAACGTCAAGGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGATCAG 19826 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | |||||| | ||||||||| | ||||| | | | | | ||||| ||| Sbjct 19827 CAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCCTATCTGATTACAAC 19886 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 |||||||| || || ||| | ||||| || Sbjct 19887 ATTCAAAAGGAGTCGACATTGCATTTGGT 19915 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 ||||||||| | |||||||||||||||||||| ||| | ||||| | ||||| || || Sbjct 19476 AAAATGCAAATCTTTGTAAAAACATTAACTGGCAAAACTATTACTTTGGAAGTTGA-ACC 19534 Query 24048 AAC-GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | | || || ||||| | || || || ||| ||||| ||||| || || || || Sbjct 19535 ATCGGATACTATCGAAAATGTTAAGGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGA 19594 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||| || | |||||| | ||||||||| | ||||| | | | | | ||||| Sbjct 19595 TCAGCAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCTTGTCTGATTA 19654 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGT 24199 || ||||| || || || ||| | ||||| || Sbjct 19655 CAATATTCAGAAGGAGTCGACATTGCATTTGGT 19687 >seq15038 Length=36294 Score = 93.3 bits (102), Expect = 4e-14 Identities = 673/1065 (63%), Gaps = 48/1065 (5%) Strand=Plus/Plus Query 132199 ATGTTGATTTACTATTTGATATTCACCCGATAAGACTCTTCGTACGTACAAATTACTAGT 132258 ||| ||||| |||| | | ||||| || | || | |||| ||| | || ||| Sbjct 4790 ATGATGATTGACTACGATAAACTCACCAGACAGTACGCGTCGTGTGTAAATGTTTGAAGT 4849 Query 132259 AAACGGCTCGAACGATTCGTTGTTTCCCAATATTTGAGCTGTCGTTGCCGTCGGCATGTA 132318 | ||||||| || || |||||||| || | |||||||| || | ||||| ||||| Sbjct 4850 ATACGGCTCAAAAGACTCGTTGTTACCAAGAATTTGAGCAGTAGACGCCGTAGGCATTGG 4909 Query 132319 GGCAATCAATAATGAATTGCGCAGCCCGTGTATGGCCATT--TGCCGT--TTAAGCTCGT 132374 || | || || |||||||||| || | | || || ||| ||||| || Sbjct 4910 AGCTACCAGCAAAGAATTGCGCACTCC----ACACCTTTTAATGTCGTCTTTAAGAGCGG 4965 Query 132375 CCCAGTTCCACAGATCATTCGATTGAGAGATATTCCACAAATCAAACTGTAAATGACCGC 132434 ||| ||||| ||| || | | | | ||| ||||| |||| | || | ||| Sbjct 4966 ACCAATTCCATAGACCAGTAG---GCGTTTTATCCCACATATCATATTGAAGGATACCTT 5022 Query 132435 TACTTGCAGGAGATCCGTTATAAGAATCGTATGCTCCGTGTAATTTGGCAAGTTCTATGC 132494 |||| | ||| || | ||| | ||||| | |||| || |||||| | ||| | Sbjct 5023 TACTAACTGGACTACCTTCATATGTTTCGTACGGACCGTATAGTTTGGCCAATTCACAAC 5082 Query 132495 TCTGACTC-AGGGCACCATAATAAATAGTCTCTGAGATTTTTCTATTCAATTCCCTTGCT 132553 | | || | |||||| ||||| || || || | |||| | |||| || || Sbjct 5083 TA-GCTTCTAAGGCACCGTAATATATTGTTTCAAAAATTTGTTTATTTAAGCGTGCAGCA 5141 Query 132554 TGTTGACTGTCGTAGGGCAAAT---TTAAAATAGCGAACGCATCGGCAAGTCCCTGAATG 132610 | || || |||||||| || ||||||| | || || |||| ||| || | | Sbjct 5142 TTTTCGCTTTCGTAGGGATAACGCATTAAAATT---AGTGCGTCAGCAAATCCTTGGACG 5198 Query 132611 CCGATACCGATGGGTCTATGTTTAAAATTCGA--TACTTGTGCGCTAGTCAGCGGATAAA 132668 || | ||| || || | ||| |||||| || | || || | | || || || Sbjct 5199 CCTAAACCAATTGGACGATGACGAAAATTAGACTTTCTGGTTTCC--GGCAATGGGTAGT 5256 Query 132669 AGTTTTTGTCTATTATTTTATTGAGATTGTTAGTGACAACTCTAGCCACTTTATATAGCG 132728 | || | || |||||||| |||||||| | || | || | || |||| | || Sbjct 5257 AATTGATATCGATTATTTTGTTGAGATTCCTTGTTATAAGCTTTGCAACTTCTTTGAGTT 5316 Query 132729 ATTCAAAGTCAAAGTTTTTAGTCCTTTTGTTGGCAA-AACA-ATTGACGGCAATCGAGGC 132786 | ||| ||| | | |||| ||||| | | |||| ||| | ||||| || || Sbjct 5317 TGTGAAAATCATATTGTTTA-----TTTGTCGTTACGAACATATTCAACGCAATTGATGC 5371 Query 132787 CAAATTGCATACGGCTGTCTCTTTATTATCGCTATACTGTACGATTTCTGCACACAAATT 132846 || |||||| || ||| | |||| | |||| | |||||||||| ||| || || Sbjct 5372 CAGATTGCAAACTGCTATTTCTTCAGCCGACGTATATTCGACGATTTCTGTACATAAGTT 5431 Query 132847 ACTGTTTCGAATAACTCCCAAGtttttttGATTGTTTTTCTCGTTTACGTTATCTTTATG 132906 |||| | ||| || | || | |||||| |||| ||| ||||| | Sbjct 5432 ACTGCATTTTATAGTGCCAACATTCTGTTGATTACTTTTGCGGTTGCAAGCGTCTTTGTA 5491 Query 132907 CAACATGTACGGACCTCCGGTTTCGACCTGA--ATTTCGATAATTTTTCTGTGAAGATCT 132964 | |||||| ||| ||||||||| || || | | | || || | | | | Sbjct 5492 AAGCATGTAAGGAGTTCCGGTTTCTACTTGGGCACTGC----ATATTGCGAACCATAAGT 5547 Query 132965 AACGCCAAAAT-TTGTTCTTTAAACTT-GCCCTGAGTCT-CGTAACTTTCGTATAATCGC 133021 ||| | ||||| | | ||| ||||| |||| |||| | ||||||||| Sbjct 5548 CACGAGCTTTTATTGTTTTGTTCGCTTTGCCCTC-GTCTTCGTATTTCACGTATAATCTA 5606 Query 133022 TCAAATTCTTCGCCATAGCAGTCGTTCAAACCGGGACACTCGTCAGGACACATCAATGAC 133081 ||||||| || ||||| || ||| || || || | | |||||||| | ||| Sbjct 5607 TCAAATTTGTCTCCATAAATTTCACACAAGCCAGGGCATTTATGGGGACACATTAGAGAC 5666 Query 133082 CATTTTTCTCCTGCGCTCACC-CTTTTCATGAACAACGAAGGTGTCCACATGGCAAAAAA 133140 || | || | || |||| | ||||||||||||| |||| |||||| ||| |||| Sbjct 5667 CAATGCTCATCAGC-CTCAACTCTTTTCATGAACAGATCAGGTATCCACAGAGCATAAAA 5725 Query 133141 TAAATCGCGAGCCTTCATATCTTCCGC---GCCCATATTTCGTTTCAAGTCCaaaaaagt 133197 |||||| || || ||| ||| | ||| ||||| |||||| | | ||| Sbjct 5726 TAAATCTCGTGC---ACGATCCTCCTCTTTACCCGTATTTTTTTTCAAATTTAGAAATTC 5782 Query 133198 aaaaaTGTCTGCATGCCAAGGCTCGATATATACGGCCAAAGCGCC 133242 ||||| ||||| ||||||||||| | |||| || ||||| || Sbjct 5783 GAAAATATCTGCGTGCCAAGGCTCTAAGTATATAGCAAAAGCCCC 5827 >seq1380 Length=63849 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 101009 TACCTCAAGGCTTACACGGCTTTCATGTTCACGAATTCGGCGACACAAGCAACGGCTGCA 101068 || || | || ||||| || |||||||||||||||||||| |||| | |||||||||| Sbjct 30935 TATCTAAGGGATTACATGGTTTTCATGTTCACGAATTCGGGGACAATACTAACGGCTGCA 30994 Query 101069 CGTCTGCGGGCGAACATTTTAACCCTACGGGCATGGCTCACGGCGCACCCAACTCTGCCG 101128 | ||||| || | |||||||| ||| | | ||||| ||||||| | | Sbjct 30995 CTTCTGCCGGTGCGCATTTTAATCCTTGCAATAAAGAGCACGGAGCACCCACTGATAATG 31054 Query 101129 TTCGTCACGTCGGTGATCTTGGCAATATTGA 101159 ||||| |||||||| | |||||| |||| Sbjct 31055 AGCGTCATATCGGTGATTTGGGCAATGTTGA 31085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429809871691005